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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_04470 and AO353_04475 are separated by 190 nucleotides
AO353_04475 and AO353_04480 are separated by 916 nucleotides
AO353_04480 and AO353_04485 are separated by 5 nucleotides
AO353_04485 and AO353_04490 are separated by 286 nucleotides
AO353_04470: AO353_04470 - hypothetical protein, at 962,643 to 962,942
_04470
AO353_04475: AO353_04475 - hypothetical protein, at 963,133 to 963,522
_04475
AO353_04480: AO353_04480 - NGG1p interacting factor NIF3, at 964,439 to 964,750
_04480
AO353_04485: AO353_04485 - phosphoribosylformylglycinamidine synthase, at 964,756 to 968,652
_04485
AO353_04490: AO353_04490 - murein transglycosylase, at 968,939 to 970,399
_04490
Group
Condition
AO353
_04470
AO353
_04475
AO353
_04480
AO353
_04485
AO353
_04490
stress
Fusidic 0.125 mg/ml
-0.2
-0.3
-0.3
N.D.
-2.5
stress
D-Cycloserine 0.1 mg/ml
-0.1
-0.0
-0.7
N.D.
-2.3
stress
Tetracycline 0.0016 mg/ml
-0.1
-0.0
-0.2
N.D.
-2.7
stress
Rifampicin 0.005 mg/ml
+0.1
-0.2
+0.1
N.D.
-2.8
stress
Benzalkonium Chloride 0.012 mg/ml
+0.0
+0.3
+0.2
N.D.
-3.1
stress
Spectinomycin 0.15 mg/ml
+0.1
-0.2
-0.1
N.D.
-2.3
stress
Doxycycline hyclate 0.0006 mg/ml
-0.2
+0.0
-0.4
N.D.
-1.9
stress
Spectinomycin 0.2 mg/ml
-0.1
+0.1
+0.5
N.D.
-3.0
stress
Sisomicin 0.008 mg/ml
+0.0
+0.1
-0.9
N.D.
-1.6
stress
Spectinomycin 0.1 mg/ml
+0.0
-0.3
-0.0
N.D.
-2.1
stress
Paraquat dichloride 0.032 mg/mL
+0.0
-1.0
-0.3
N.D.
-1.0
survival
4C survival; 672 hrs
-0.1
-1.0
-0.9
N.D.
-0.2
stress
Benzalkonium Chloride 0.01 mg/ml
+0.1
-0.4
+0.3
N.D.
-2.2
stress
Vancomycin 1 mg/ml
-0.0
-0.2
+0.3
N.D.
-2.2
stress
Benzethonium chloride 0.025 mM
+0.2
-0.2
-0.1
N.D.
-1.9
motility
outer cut, LB soft agar motility assay
+0.1
-0.9
+0.0
N.D.
-1.0
motility
outer cut, LB soft agar motility assay
-0.0
-1.4
+0.2
N.D.
-0.4
stress
Lomefloxacin 0.001 mM
+0.3
-1.3
+0.9
N.D.
-1.4
stress
Doxycycline hyclate 0.0002 mg/ml
+0.1
-0.6
+0.9
N.D.
-1.8
stress
Chloride 500 mM
-0.2
-0.2
+0.3
N.D.
-1.2
stress
Cobalt chloride 0.32 mM
+0.2
+0.1
-0.2
N.D.
-1.3
stress
Tetracycline 0.0008 mg/ml
+0.0
-0.3
+0.6
N.D.
-1.3
stress
Cisplatin 0.006 mg/ml
+0.2
+0.4
-0.5
N.D.
-0.9
stress
copper (II) chloride 2.5 mM
+0.2
+0.3
-0.6
N.D.
-0.7
stress
Cobalt chloride 0.32 mM
+0.2
+0.3
+0.2
N.D.
-1.1
carbon source
L-Leucine (C)
-0.2
+0.8
-0.2
N.D.
-0.7
carbon source
L-Ornithine
-0.1
+0.9
-0.9
N.D.
-0.2
carbon source
L-Citrulline
+0.1
+1.0
-1.0
N.D.
-0.2
stress
Cisplatin 0.006 mg/ml
-0.4
+1.1
+0.3
N.D.
-1.0
carbon source
acetate (C)
+0.4
-0.4
-0.3
N.D.
+0.8
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