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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_04210 and AO353_04215 are separated by 320 nucleotides
AO353_04215 and AO353_04220 are separated by 42 nucleotides
AO353_04220 and AO353_04225 overlap by 4 nucleotides
AO353_04225 and AO353_04230 overlap by 4 nucleotides
AO353_04210: AO353_04210 - peptide chain release factor 2, at 903,742 to 904,623
_04210
AO353_04215: AO353_04215 - diguanylate cyclase, at 904,944 to 905,945
_04215
AO353_04220: AO353_04220 - chemotaxis protein CheY, at 905,988 to 906,998
_04220
AO353_04225: AO353_04225 - chemotaxis protein CheA, at 906,995 to 909,289
_04225
AO353_04230: AO353_04230 - chemotaxis protein CheW, at 909,286 to 909,969
_04230
Group
Condition
AO353
_04210
AO353
_04215
AO353
_04220
AO353
_04225
AO353
_04230
motility
outer cut, LB soft agar motility assay
N.D.
+0.1
-1.5
-0.6
-1.8
carbon source
propionate (C)
N.D.
-0.3
-2.0
-0.2
-1.0
carbon source
L-Tryptophan (C)
N.D.
-0.0
-3.2
-0.1
+0.2
carbon source
L-Phenylalanine (C)
N.D.
-0.3
-1.8
+0.1
-0.8
carbon source
L-Valine (C)
N.D.
+0.2
-2.0
+0.1
-0.8
carbon source
L-Citrulline
N.D.
+0.2
-1.3
+0.1
-1.5
carbon source
L-Alanine (C)
N.D.
+0.1
-1.1
-0.2
-1.4
stress
nitrate 200 mM
N.D.
+0.2
-2.0
-0.3
-0.4
motility
outer cut, LB soft agar motility assay
N.D.
+0.3
-1.2
-0.3
-1.0
denitrifying
Nitrate reduction, replicate C
N.D.
-0.1
-1.3
+0.1
-0.9
carbon source
L-Citrulline
N.D.
+0.3
-1.9
+0.1
-0.5
nitrogen source
L-tyrosine (N)
N.D.
-0.2
-2.3
-0.1
+0.6
carbon source
L-Leucine (C)
N.D.
+0.2
-1.7
+0.1
-0.6
nitrogen source
NAG (N)
N.D.
+0.2
-2.1
+0.1
-0.1
carbon source
L-Citrulline
N.D.
+0.4
-2.1
+0.2
-0.4
carbon source
L-Citrulline
N.D.
+0.7
-2.6
-0.1
+0.2
carbon source
L-Lactate (C)
N.D.
-0.0
-1.9
-0.2
+0.3
nitrogen source
Thymine (N)
N.D.
-0.1
-2.0
+0.2
+0.2
carbon source
Tween 20 (C)
N.D.
+0.1
-2.0
+0.1
+0.3
nitrogen source
Gly-DL-Asp (N)
N.D.
+0.1
-1.0
+0.4
-1.0
nitrogen source
Parabanic Acid (N)
N.D.
+0.1
-2.0
+0.2
+0.6
carbon source
L-Histidine (C)
N.D.
+0.1
-1.7
+0.1
+0.6
stress
Doxycycline hyclate 0.0006 mg/ml
N.D.
+0.2
+0.6
+0.5
-1.6
stress
acetate 68 mM
N.D.
+0.1
+1.8
+0.3
+0.2
stress
Cholin acetate 19 mM
N.D.
+0.1
+2.4
+0.5
-0.5
stress
acetate 17 mM
N.D.
+0.1
+2.2
+0.3
+0.4
stress
1-ethyl-3-methylimidazolium acetate 20 mM
N.D.
+0.0
+2.8
+0.6
-0.2
stress
1-ethyl-3-methylimidazolium acetate 15 mM
N.D.
+0.0
+2.7
+0.6
-0.1
stress
acetate 34 mM
N.D.
+0.0
+2.4
+0.5
+0.3
stress
Cholin acetate 38 mM
N.D.
+0.1
+2.4
+0.6
+0.3
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