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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_04190 and AO353_04195 are separated by 75 nucleotides
AO353_04195 and AO353_04200 are separated by 42 nucleotides
AO353_04200 and AO353_04205 are separated by 114 nucleotides
AO353_04205 and AO353_04210 are separated by 110 nucleotides
AO353_04190: AO353_04190 - glycerol-3-phosphate dehydrogenase, at 898,376 to 899,914
_04190
AO353_04195: AO353_04195 - hypothetical protein, at 899,990 to 901,267
_04195
AO353_04200: AO353_04200 - TetR family transcriptional regulator, at 901,310 to 902,014
_04200
AO353_04205: AO353_04205 - lysine--tRNA ligase, at 902,129 to 903,631
_04205
AO353_04210: AO353_04210 - peptide chain release factor 2, at 903,742 to 904,623
_04210
Group
Condition
AO353
_04190
AO353
_04195
AO353
_04200
AO353
_04205
AO353
_04210
stress
copper (II) chloride 2.5 mM
-3.8
-0.1
+0.3
N.D.
N.D.
survival
4C survival; 360 hrs
-3.2
-0.2
-0.2
N.D.
N.D.
stress
Gentamicin 0.006 mg/ml
-3.1
+0.0
+0.2
N.D.
N.D.
stress
Benzalkonium Chloride 0.012 mg/ml
-2.6
+0.1
-0.4
N.D.
N.D.
survival
4C survival; 672 hrs
-2.0
-0.2
-0.6
N.D.
N.D.
carbon source
Glycerol (C)
-2.9
-0.0
+0.1
N.D.
N.D.
stress
Benzalkonium Chloride 0.01 mg/ml
-2.7
+0.1
-0.1
N.D.
N.D.
carbon source
propionate (C)
-2.6
-0.0
+0.1
N.D.
N.D.
stress
Spectinomycin 0.15 mg/ml
-2.7
+0.0
+0.1
N.D.
N.D.
stress
Tetracycline 0.0016 mg/ml
-3.0
+0.2
+0.2
N.D.
N.D.
stress
Choline Lysine 12 mM
-2.9
+0.1
+0.3
N.D.
N.D.
survival
4C survival; 192 hrs
-2.4
+0.1
-0.1
N.D.
N.D.
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
-2.5
+0.1
+0.0
N.D.
N.D.
stress
Dimethyl Sulfoxide 7.5 vol%
-2.3
-0.0
-0.0
N.D.
N.D.
carbon source
D-Lactate (C)
-2.5
-0.0
+0.2
N.D.
N.D.
carbon source
Glycerol (C)
-2.2
-0.1
-0.1
N.D.
N.D.
stress
nitrite 10 mM
-2.2
+0.0
-0.0
N.D.
N.D.
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-2.3
+0.2
+0.1
N.D.
N.D.
carbon source
acetate (C)
-2.3
+0.1
+0.6
N.D.
N.D.
stress
Cisplatin 0.006 mg/ml
-2.1
+0.5
+0.3
N.D.
N.D.
carbon source
L-Citrulline
+1.6
-0.5
+0.4
N.D.
N.D.
carbon source
L-Citrulline
+2.0
-0.2
+0.2
N.D.
N.D.
carbon source
L-Citrulline (C)
+2.2
+0.1
-0.2
N.D.
N.D.
stress
methylglyoxal 0.009 vol%
+2.2
+0.1
-0.0
N.D.
N.D.
carbon source
L-Citrulline
+2.5
-0.2
+0.3
N.D.
N.D.
nitrogen source
Gly-DL-Asp (N)
+0.1
+0.0
+2.5
N.D.
N.D.
stress
Fusidic 0.125 mg/ml
+3.0
+0.0
+0.2
N.D.
N.D.
stress
nitrate 200 mM
+3.6
+0.2
+0.1
N.D.
N.D.
stress
perchlorate 75 mM
+3.8
+0.0
+0.1
N.D.
N.D.
nitrogen source
Gly-Glu (N)
+0.9
+0.2
+3.2
N.D.
N.D.
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