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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_04000 and AO353_04005 are separated by 100 nucleotides
AO353_04005 and AO353_04010 are separated by 2 nucleotides
AO353_04010 and AO353_04015 are separated by 125 nucleotides
AO353_04015 and AO353_04020 overlap by 11 nucleotides
AO353_04000: AO353_04000 - acriflavine resistance protein B, at 859,573 to 862,599
_04000
AO353_04005: AO353_04005 - hypothetical protein, at 862,700 to 862,930
_04005
AO353_04010: AO353_04010 - InaA protein, at 862,933 to 863,646
_04010
AO353_04015: AO353_04015 - histidine kinase, at 863,772 to 865,052
_04015
AO353_04020: AO353_04020 - XRE family transcriptional regulator, at 865,042 to 865,725
_04020
Group
Condition
AO353
_04000
AO353
_04005
AO353
_04010
AO353
_04015
AO353
_04020
stress
Polymyxin B sulfate 4 mg/ml
-0.1
+0.1
-0.1
-0.7
-2.8
carbon source
L-Ornithine
-0.1
-0.6
-0.3
-0.5
-0.2
stress
Benzalkonium Chloride 0.01 mg/ml
+0.1
-0.9
-0.3
-0.5
-0.0
carbon source
L-Leucine (C)
-0.1
-1.0
+0.2
-0.5
-0.0
motility
outer cut, LB soft agar motility assay
-0.1
-1.1
-0.4
-0.2
+0.2
carbon source
L-Citrulline
-0.1
-0.7
+0.2
-0.9
+0.1
motility
outer cut, LB soft agar motility assay
+0.1
-0.1
-0.0
+0.0
-1.2
carbon source
L-Serine (C)
-0.1
-0.8
-0.1
-0.2
+0.2
carbon source
L-Ornithine
-0.1
+0.3
-0.1
-0.9
-0.2
stress
methylglyoxal 0.009 vol%
+0.0
-0.5
+0.1
-0.7
+0.2
carbon source
L-Citrulline
-0.1
-0.8
+0.3
-0.5
+0.2
carbon source
L-Ornithine
-0.1
-0.5
+0.3
-0.5
-0.1
carbon source
Trisodium citrate (C)
+0.1
-0.2
+0.0
-1.1
+0.2
carbon source
propionate (C)
+0.2
-0.3
-0.2
-0.7
+0.3
carbon source
L-Citrulline
+0.1
+0.2
+0.1
-0.8
-0.3
carbon source
Trisodium citrate (C)
-0.0
+0.1
+0.1
-1.1
+0.3
pH
Minimal media pH9
+0.1
+0.3
-0.0
-1.1
+0.2
carbon source
D-Glucose
-0.2
+0.7
+0.3
-0.7
-0.5
stress
Cisplatin 0.006 mg/ml
+0.3
-0.1
-0.4
+0.3
-0.4
stress
Lomefloxacin 0.001 mM
+0.1
+0.5
-0.2
-0.7
+0.2
carbon source
acetate (C)
+0.2
-0.1
+0.4
-0.6
+0.1
stress
perchlorate 75 mM
-0.0
-0.1
-0.1
+0.8
-0.5
stress
Doxycycline hyclate 0.0006 mg/ml
-0.2
-0.2
+0.7
-0.8
+0.7
carbon source
L-Valine (C)
-0.0
+0.6
-0.3
-0.5
+0.4
carbon source
D-Serine (C)
-0.0
+0.7
-0.1
-0.5
+0.3
stress
Cisplatin 0.006 mg/ml
-0.0
-0.4
+0.5
+0.7
+0.3
stress
Gentamicin 0.006 mg/ml
+0.1
+0.4
+0.0
+0.8
-0.2
stress
Spectinomycin 0.2 mg/ml
-0.1
+0.3
-0.0
+0.7
+0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.0
+1.1
+0.2
+0.5
+0.4
stress
Sisomicin 0.008 mg/ml
+0.1
+0.2
-0.1
+3.6
-0.4
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