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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_03790 and AO353_03795 are separated by 491 nucleotides
AO353_03795 and AO353_03800 are separated by 156 nucleotides
AO353_03800 and AO353_03805 overlap by 7 nucleotides
AO353_03805 and AO353_03810 are separated by 206 nucleotides
AO353_03790: AO353_03790 - hypothetical protein, at 808,932 to 810,038
_03790
AO353_03795: AO353_03795 - fumarate hydratase, at 810,530 to 812,053
_03795
AO353_03800: AO353_03800 - cytochrome C biogenesis protein CcmE, at 812,210 to 813,976
_03800
AO353_03805: AO353_03805 - C4-dicarboxylate ABC transporter, at 813,970 to 815,295
_03805
AO353_03810: AO353_03810 - Alpha-ketoglutarate permease, MFS superfamily
(from data)
, at 815,502 to 816,821
_03810
Group
Condition
AO353
_03790
AO353
_03795
AO353
_03800
AO353
_03805
AO353
_03810
carbon source
a-Ketoglutaric (C)
-0.0
-1.7
-3.4
-3.1
-4.3
carbon source
a-Ketoglutaric (C)
+0.7
-2.4
-3.2
-3.1
-3.9
carbon source
L-Citrulline (C)
+0.2
-3.0
+0.0
-0.4
-0.0
carbon source
L-Glutamic (C)
+0.1
-3.4
+0.1
-0.0
+0.1
stress
acetate 34 mM
-0.3
-2.7
-0.1
-0.1
+0.1
nitrogen source
L-Citrulline (N)
+0.2
-2.9
-0.0
-0.4
-0.1
stress
Tetracycline 0.0016 mg/ml
-0.1
-2.3
+0.1
-0.8
+0.0
carbon source
Fumarate (C)
+0.1
-3.3
+0.0
+0.0
+0.0
carbon source
succinate (C)
+0.1
-2.1
-0.3
-0.3
-0.3
stress
1-ethyl-3-methylimidazolium chloride 170 mM
+0.1
-2.4
+0.0
-0.7
+0.0
stress
acetate 68 mM
+0.2
-2.5
-0.0
-0.5
-0.1
carbon source
casaminos (C)
+0.0
-2.9
-0.1
+0.0
+0.1
stress
benzoic 0.58 mg/ml
+0.1
-2.7
+0.2
-0.4
-0.0
nitrogen source
L-Glutamine (N)
+0.1
-2.4
+0.1
-0.5
-0.1
stress
copper (II) chloride 2.5 mM
+0.1
-1.8
-0.0
-0.9
+0.0
carbon source
L-Histidine (C)
+0.0
-2.6
-0.1
+0.1
+0.0
motility
outer cut, LB soft agar motility assay
+1.2
-2.8
-0.0
-1.0
+0.3
carbon source
L-Glutamine (C)
+0.1
-2.6
+0.0
-0.1
+0.2
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.2
-2.4
+0.1
+0.2
-0.1
carbon source
L-Histidine (C)
-0.0
-2.4
-0.1
+0.2
+0.2
carbon source
acetate (C)
-0.4
-2.3
+0.5
-0.1
+0.2
stress
Cholin acetate 38 mM
-0.2
-2.2
+0.2
+0.4
+0.1
nitrogen source
L-Serine (N)
+0.1
-2.3
+0.0
+0.6
+0.1
motility
outer cut, LB soft agar motility assay
+1.1
-0.7
-0.5
+0.6
+0.2
stress
Cisplatin 0.006 mg/ml
-0.3
+1.9
-0.1
-0.6
+0.3
stress
Cisplatin 0.006 mg/ml
-0.4
+2.0
+0.3
-0.5
+0.2
stress
Fusidic 0.125 mg/ml
-0.0
+3.4
-0.3
-1.4
-0.0
denitrifying
Nitrate reduction, replicate B
-0.2
+1.9
+0.1
+0.5
-0.1
stress
nitrate 200 mM
+0.3
+3.3
-0.2
-0.2
-0.1
stress
perchlorate 75 mM
+0.1
+4.3
-0.4
-0.2
-0.0
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