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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_03655 and AO353_03660 are separated by 144 nucleotides
AO353_03660 and AO353_03665 overlap by 4 nucleotides
AO353_03665 and AO353_03670 are separated by 96 nucleotides
AO353_03670 and AO353_03675 are separated by 138 nucleotides
AO353_03655: AO353_03655 - cobalamin adenosyltransferase, at 780,010 to 780,591
_03655
AO353_03660: AO353_03660 - hypothetical protein, at 780,736 to 781,677
_03660
AO353_03665: AO353_03665 - glutathione S-transferase, at 781,674 to 782,306
_03665
AO353_03670: AO353_03670 - ornithine acetyltransferase, at 782,403 to 783,620
_03670
AO353_03675: AO353_03675 - preprotein translocase subunit SecA, at 783,759 to 786,494
_03675
Group
Condition
AO353
_03655
AO353
_03660
AO353
_03665
AO353
_03670
AO353
_03675
carbon source
L-Citrulline
-0.2
-1.5
-0.5
-0.8
N.D.
carbon source
L-Ornithine
-0.9
-1.2
-0.4
-0.4
N.D.
carbon source
D-Glucose
-0.1
-0.9
-0.0
-1.7
N.D.
carbon source
acetate (C)
-0.3
-0.1
+0.1
-2.1
N.D.
temperature
LB 30C
-0.5
-0.1
+0.0
-1.7
N.D.
carbon source
acetate (C)
-0.0
+0.2
+0.3
-2.7
N.D.
pH
Minimal media pH8
-0.2
-1.0
-0.0
-1.1
N.D.
carbon source
pyruvate (C)
-0.2
-0.2
-0.0
-1.7
N.D.
survival
4C survival; 672 hrs
-0.7
-1.3
+0.1
-0.2
N.D.
stress
Doxycycline hyclate 0.0002 mg/ml
-0.3
-0.3
-0.1
-1.4
N.D.
carbon source
propionate (C)
-0.0
-0.3
-0.2
-1.5
N.D.
carbon source
L-Histidine (C)
-0.3
-0.3
+0.1
-1.6
N.D.
stress
Vancomycin 1 mg/ml
-0.1
+0.2
+0.1
-2.3
N.D.
carbon source
L-Aspartic Acid (C)
-0.4
-0.1
+0.1
-1.5
N.D.
carbon source
casaminos (C)
-0.2
-1.1
+0.2
-0.8
N.D.
carbon source
D-Glucose
+0.1
-0.5
-0.2
-1.2
N.D.
carbon source
L-Histidine (C)
-0.3
-0.2
+0.1
-1.2
N.D.
lb
LB
-0.2
+0.2
-0.4
-1.2
N.D.
carbon source
L-Ornithine
+0.2
-0.9
-0.1
-0.7
N.D.
carbon source
propionate (C)
-0.1
+0.1
+0.1
-1.5
N.D.
stress
Cholin acetate 19 mM
+0.2
-0.6
+0.1
-0.9
N.D.
stress
Doxycycline hyclate 0.0006 mg/ml
-0.3
+0.8
-0.0
-1.6
N.D.
carbon source
L-Valine (C)
+0.4
-1.2
-0.2
-0.0
N.D.
pH
Minimal media pH9
-0.6
-1.5
-0.0
+1.2
N.D.
carbon source
L-Citrulline
-0.2
-1.0
-0.1
+0.9
N.D.
stress
Tetracycline 0.0016 mg/ml
-0.6
+1.0
-0.2
-0.3
N.D.
pH
Minimal media pH9
+0.0
-0.9
-0.2
+1.5
N.D.
stress
Sisomicin 0.008 mg/ml
-0.2
-0.8
+0.2
+1.6
N.D.
stress
perchlorate 75 mM
-0.0
+0.3
-0.1
+1.7
N.D.
stress
nitrate 200 mM
-0.0
+0.6
+0.2
+1.7
N.D.
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