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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_03565 and AO353_03570 are separated by 14 nucleotides
AO353_03570 and AO353_03575 overlap by 11 nucleotides
AO353_03575 and AO353_03580 are separated by 139 nucleotides
AO353_03580 and AO353_03585 are separated by 0 nucleotides
AO353_03565: AO353_03565 - protein TolR, at 763,104 to 763,565
_03565
AO353_03570: AO353_03570 - protein TolQ, at 763,580 to 764,275
_03570
AO353_03575: AO353_03575 - 4-hydroxybenzoyl-CoA thioesterase, at 764,265 to 764,732
_03575
AO353_03580: AO353_03580 - ATP-dependent DNA helicase RuvB, at 764,872 to 765,933
_03580
AO353_03585: AO353_03585 - ATP-dependent DNA helicase RuvA, at 765,934 to 766,542
_03585
Group
Condition
AO353
_03565
AO353
_03570
AO353
_03575
AO353
_03580
AO353
_03585
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
-0.6
-2.9
-2.8
stress
Lomefloxacin 0.001 mM
N.D.
N.D.
-0.6
-2.8
-2.7
stress
methylglyoxal 0.008 vol%
N.D.
N.D.
-0.1
-3.2
-2.7
pH
Minimal media pH9
N.D.
N.D.
-0.1
-3.2
-2.5
stress
Cobalt chloride 0.32 mM
N.D.
N.D.
-0.4
-3.0
-2.3
pH
Minimal media pH9
N.D.
N.D.
-0.3
-3.4
-1.9
carbon source
Carnitine Hydrochloride (C)
N.D.
N.D.
-0.2
-3.1
-2.1
stress
methylglyoxal 0.009 vol%
N.D.
N.D.
+0.1
-2.7
-2.7
carbon source
L-Arginine (C)
N.D.
N.D.
-0.0
-1.7
-3.5
carbon source
D-Alanine (C)
N.D.
N.D.
-0.2
-2.5
-2.5
stress
Spectinomycin 0.2 mg/ml
N.D.
N.D.
-0.2
-1.5
-3.4
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
-0.7
-2.9
-1.5
carbon source
D-Ribose (C)
N.D.
N.D.
-0.2
-2.4
-2.4
stress
A22 0.01 mg/ml
N.D.
N.D.
+0.1
-1.8
-3.4
stress
Nickel (II) chloride 0.625 mM
N.D.
N.D.
-0.1
-1.9
-3.0
stress
Nalidixic 0.004 mg/ml
N.D.
N.D.
-0.1
-2.7
-2.2
carbon source
L-Ornithine
N.D.
N.D.
-0.1
-1.2
-3.7
nitrogen source
Urea (N)
N.D.
N.D.
-0.1
-3.2
-1.6
survival
4C survival; 360 hrs
N.D.
N.D.
-0.4
-2.0
-2.5
stress
Vancomycin 1 mg/ml
N.D.
N.D.
-0.2
-3.0
-1.7
stress
Benzethonium chloride 0.025 mM
N.D.
N.D.
-0.5
-3.0
-1.3
carbon source
Tween 20 (C)
N.D.
N.D.
+0.1
-3.0
-1.9
carbon source
D-Ribose (C)
N.D.
N.D.
-0.2
-2.6
-1.9
carbon source
D-Lactate (C)
N.D.
N.D.
-0.3
-2.4
-2.0
stress
Paraquat dichloride 0.032 mg/mL
N.D.
N.D.
+0.0
-1.9
-2.8
carbon source
propionate (C)
N.D.
N.D.
-0.5
-1.7
-2.5
stress
Polymyxin B sulfate 4 mg/ml
N.D.
N.D.
-0.2
-2.1
-2.3
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
N.D.
N.D.
+0.1
-3.1
-1.5
stress
Benzalkonium Chloride 0.012 mg/ml
N.D.
N.D.
+0.3
-2.5
-2.0
carbon source
acetate (C)
N.D.
N.D.
+0.4
-1.8
-2.5
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