Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_03480 and AO353_03485 are separated by 57 nucleotidesAO353_03485 and AO353_03490 are separated by 182 nucleotidesAO353_03490 and AO353_03495 are separated by 495 nucleotidesAO353_03495 and AO353_03500 are separated by 9 nucleotides AO353_03480: AO353_03480 - carbamate kinase, at 744,313 to 745,242 _03480 AO353_03485: AO353_03485 - acetyl-CoA carboxylase, at 745,300 to 745,656 _03485 AO353_03490: AO353_03490 - Fis family transcriptional regulator, at 745,839 to 747,347 _03490 AO353_03495: AO353_03495 - glycine cleavage system protein H, at 747,843 to 748,226 _03495 AO353_03500: AO353_03500 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data), at 748,236 to 751,088 _03500
Group Condition AO353_03480 AO353_03485 AO353_03490 AO353_03495 AO353_03500
nitrogen source Glycine (N) -0.0 +0.2 -3.1 -2.3 -3.8
nitrogen source Glycine (N) -0.1 -0.2 -2.6 -2.5 -3.1
nitrogen source L-Threonine (N) -0.1 +0.1 -2.1 -2.7 -2.8
nitrogen source L-Threonine (N) +0.1 +0.1 -2.0 -1.6 -2.8
nitrogen source Gly-Glu (N) -0.2 +0.1 -1.0 -1.4 -2.4
pH Minimal media pH9 +0.1 +0.1 -0.7 -0.6 -1.7
pH Minimal media pH9 +0.1 +0.3 -0.3 -0.4 -1.4
carbon source L-Ornithine -0.3 -0.0 -0.4 -0.6 -0.1
carbon source L-Phenylalanine (C) +0.3 -0.1 -0.5 -0.7 -0.2
stress Lomefloxacin 0.001 mM -0.6 -0.0 -0.1 -0.7 +0.3
nitrogen source Gly-DL-Asp (N) +0.1 +0.2 -0.3 -0.5 -0.6
stress methylglyoxal 0.009 vol% -0.0 +0.2 -0.7 -0.4 +0.0
anaerobic N1B4wt with N2E3m denitrifying replicate C -0.4 -0.1 -0.2 +0.4 -0.4
nitrogen source Parabanic Acid (N) -0.5 +0.4 +0.2 -0.2 -0.5
motility outer cut, LB soft agar motility assay -0.4 -0.1 +0.4 -0.7 +0.4
carbon source L-Aspartic Acid (C) +0.5 -0.0 -0.3 -0.5 +0.1
carbon source propionate (C) -0.4 +0.2 -0.1 +0.5 -0.4
carbon source acetate (C) +0.3 +0.3 -0.3 -0.2 -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron +0.0 +0.3 -0.5 -0.3 +0.3
stress Cisplatin 0.006 mg/ml +0.7 -0.4 +0.1 +0.0 -0.2
stress acetate 68 mM -0.5 +0.3 +0.5 +0.1 -0.0
stress Fusidic 0.125 mg/ml -0.1 +0.4 -0.2 +0.5 +0.1
carbon source L-Serine (C) +0.5 +0.0 -0.1 +1.2 -0.7
motility outer cut, LB soft agar motility assay +0.3 +0.1 -0.1 +0.2 +0.7
motility outer cut, LB soft agar motility assay -0.5 +0.3 +1.0 +0.2 +0.5
stress Sisomicin 0.008 mg/ml +0.5 +0.5 +0.3 +0.0 +0.1
denitrifying Nitrate reduction, replicate C -0.7 -0.1 +0.7 +0.8 +0.8
carbon source L-Alanine (C) +0.3 -0.1 +0.5 +0.4 +0.5
stress Doxycycline hyclate 0.0006 mg/ml +0.4 +0.6 +0.4 +0.4 +0.4
denitrifying Nitrate reduction, replicate B -0.2 -0.1 +0.7 +0.8 +1.0
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