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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_03435 and AO353_03440 are separated by 118 nucleotides
AO353_03440 and AO353_03445 are separated by 120 nucleotides
AO353_03445 and AO353_03450 are separated by 112 nucleotides
AO353_03450 and AO353_03455 are separated by 107 nucleotides
AO353_03435: AO353_03435 - RNA polymerase subunit sigma-24, at 732,418 to 732,936
_03435
AO353_03440: AO353_03440 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 733,055 to 734,026
_03440
AO353_03445: AO353_03445 - TonB-dependent receptor, at 734,147 to 736,711
_03445
AO353_03450: AO353_03450 - heme oxygenase, at 736,824 to 737,432
_03450
AO353_03455: AO353_03455 - acyl-CoA transferase, at 737,540 to 738,886
_03455
Group
Condition
AO353
_03435
AO353
_03440
AO353
_03445
AO353
_03450
AO353
_03455
stress
Furfuryl Alcohol 0.25 vol%
+0.1
-0.4
-0.0
-0.5
-0.4
carbon source
m-Inositol (C)
-0.4
+0.2
+0.2
-0.6
-0.1
pH
Minimal media pH9
-0.1
-0.8
+0.0
+0.3
-0.2
stress
nitrate 200 mM
+0.5
-0.7
+0.0
-0.1
-0.3
motility
outer cut, LB soft agar motility assay
+0.2
+0.2
-0.0
+0.3
-1.2
stress
copper (II) chloride 2.5 mM
+0.3
-0.5
-0.0
+0.4
-0.4
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.3
+0.5
-0.3
-0.7
-0.0
radiation
Ionizing radiation, 126.196 Gy,
-0.4
-0.0
-0.0
+0.9
-0.4
stress
Cobalt chloride 0.32 mM
+0.4
-0.2
-0.1
-0.4
+0.3
carbon source
L-Citrulline
+0.3
-0.3
+0.3
-0.3
+0.3
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.3
-0.4
-0.1
+0.6
+0.5
stress
Doxycycline hyclate 0.0002 mg/ml
-0.4
+0.5
-0.1
+0.4
+0.1
stress
Tetracycline 0.0016 mg/ml
-0.2
+0.3
-0.3
+0.4
+0.4
carbon source
L-Ornithine
+0.6
-0.2
-0.0
-0.2
+0.5
nitrogen source
L-Tryptophan (N)
+0.3
+0.4
+0.0
+0.4
-0.3
stress
acetate 34 mM
-0.5
+0.2
-0.0
+0.8
+0.3
carbon source
L-Alanine (C)
+0.3
+0.6
-0.1
+0.4
-0.4
carbon source
casaminos (C)
-0.3
+0.3
+0.0
+0.6
+0.3
carbon source
L-Citrulline
+0.3
+1.2
+0.1
-0.6
-0.1
carbon source
D-Glucose
+0.1
-0.3
+0.2
+0.5
+0.5
stress
Paraquat dichloride 0.032 mg/mL
+0.7
-0.2
-0.0
+0.6
-0.1
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
+0.2
+0.5
-0.0
+0.5
-0.2
carbon source
acetate (C)
-0.1
+0.7
+0.2
-0.1
+0.6
carbon source
L-Citrulline
+0.2
-0.1
+0.1
+0.3
+0.7
carbon source
L-Citrulline
+0.6
+0.5
-0.0
-0.1
+0.3
carbon source
acetate (C)
+0.6
+0.2
+0.1
+0.4
+0.1
carbon source
L-Ornithine
+0.4
+0.5
+0.1
+0.3
+0.1
carbon source
L-Ornithine
+0.3
-0.1
+0.2
+0.5
+1.0
carbon source
propionate (C)
+0.8
+0.9
+0.1
+0.3
-0.0
motility
outer cut, LB soft agar motility assay
+0.8
+0.2
+0.2
+1.1
+0.4
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