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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_03245 and AO353_03250 are separated by 82 nucleotides
AO353_03250 and AO353_03255 are separated by 215 nucleotides
AO353_03255 and AO353_03260 are separated by 306 nucleotides
AO353_03260 and AO353_03265 are separated by 170 nucleotides
AO353_03245: AO353_03245 - permease DsdX, at 690,848 to 692,200
_03245
AO353_03250: AO353_03250 - gluconokinase, at 692,283 to 692,816
_03250
AO353_03255: AO353_03255 - LacI family transcriptional regulator, at 693,032 to 694,063
_03255
AO353_03260: AO353_03260 - epimerase, at 694,370 to 695,113
_03260
AO353_03265: AO353_03265 - siderophore synthetase, at 695,284 to 697,194
_03265
Group
Condition
AO353
_03245
AO353
_03250
AO353
_03255
AO353
_03260
AO353
_03265
carbon source
D-Gluconic Acid (C)
-3.0
-2.6
+0.1
-0.1
+0.0
carbon source
D-Gluconic Acid (C)
-3.3
-2.2
+0.2
+0.1
-0.0
pH
Minimal media pH6
-1.4
-3.1
+0.3
-0.1
+0.0
nitrogen source
nitrite (N)
-2.3
-2.0
+0.1
+0.1
+0.0
nitrogen source
L-Citrulline (N)
-2.0
-2.1
+0.2
-0.0
-0.0
nitrogen source
nitrate (N)
-2.0
-1.6
+0.1
-0.3
+0.0
pH
Minimal media pH6
-1.5
-1.9
+0.2
+0.2
+0.0
nitrogen source
Putrescine (N)
-1.9
-1.1
+0.1
+0.1
+0.0
nitrogen source
Ammonium chloride (N)
-1.2
-1.5
+0.1
-0.0
+0.0
nitrogen source
Glycine (N)
-1.2
-1.7
+0.4
+0.2
+0.1
pH
Minimal media pH8
-0.8
-1.0
-0.2
-0.2
+0.1
carbon source
D-Glucose (C)
-1.3
-1.0
+0.0
+0.1
+0.1
nitrogen source
Carnitine Hydrochloride (N)
-1.4
-0.7
+0.2
-0.0
+0.0
nitrogen source
Glycine (N)
-1.5
-0.8
+0.3
+0.3
-0.0
nitrogen source
L-Lysine (N)
-1.0
-1.3
+0.3
+0.3
+0.0
nitrogen source
L-Threonine (N)
-0.5
-2.0
+0.9
+0.0
+0.0
nitrogen source
Parabanic Acid (N)
-0.7
-0.8
-0.2
+0.4
+0.1
carbon source
L-Phenylalanine (C)
-0.5
-1.5
+0.0
+0.6
+0.2
nitrogen source
L-Arginine (N)
-1.4
-0.5
+0.3
+0.2
+0.2
carbon source
L-Citrulline
+0.3
-1.8
+0.4
+0.1
-0.0
nitrogen source
L-Threonine (N)
-0.5
-1.1
+0.7
+0.2
+0.1
carbon source
D-Glucose
-1.8
+0.6
+0.4
+0.2
+0.1
carbon source
D-Glucose
-1.5
+0.3
+0.7
+0.5
-0.2
motility
outer cut, LB soft agar motility assay
-0.5
-0.6
+0.3
+0.7
+0.2
motility
outer cut, LB soft agar motility assay
-0.3
+1.6
+0.3
-0.2
+0.1
carbon source
L-Citrulline
-0.7
+1.3
+0.4
+0.4
+0.1
carbon source
L-Ornithine
+0.2
+1.1
+1.0
-0.3
+0.1
carbon source
L-Ornithine
+0.3
+1.1
+0.7
+0.2
+0.1
nitrogen source
L-tyrosine (N)
+1.2
+1.6
-0.2
+0.1
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.6
+1.9
+3.3
+0.1
-0.0
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