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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_03200 and AO353_03205 are separated by 19 nucleotides
AO353_03205 and AO353_03210 are separated by 233 nucleotides
AO353_03210 and AO353_03215 are separated by 33 nucleotides
AO353_03215 and AO353_03220 are separated by 155 nucleotides
AO353_03200: AO353_03200 - RNA polymerase subunit sigma-24, at 682,238 to 683,473
_03200
AO353_03205: AO353_03205 - dehydrogenase, at 683,493 to 683,840
_03205
AO353_03210: AO353_03210 - GNAT family acetyltransferase, at 684,074 to 684,559
_03210
AO353_03215: AO353_03215 - pyridoxamine 5'-phosphate oxidase, at 684,593 to 685,198
_03215
AO353_03220: AO353_03220 - GNAT family acetyltransferase, at 685,354 to 685,851
_03220
Group
Condition
AO353
_03200
AO353
_03205
AO353
_03210
AO353
_03215
AO353
_03220
carbon source
L-Leucine (C)
-0.2
-0.1
-0.2
-2.1
+0.1
stress
Nickel (II) chloride 0.625 mM
+0.1
-0.4
-0.1
-1.5
-0.1
carbon source
L-Citrulline
-0.3
-0.1
-1.6
+0.0
+0.2
carbon source
L-Phenylalanine (C)
-0.0
-0.6
-0.3
-1.0
+0.2
carbon source
D-Trehalose (C)
-0.0
-0.6
-0.3
-0.5
-0.1
carbon source
L-Isoleucine (C)
+0.0
-0.5
-0.7
-0.2
-0.1
stress
D-Cycloserine 0.1 mg/ml
+0.1
-0.2
-1.1
+0.1
+0.1
stress
Lomefloxacin 0.001 mM
+0.0
+0.1
-1.4
+0.2
+0.0
carbon source
L-Citrulline
-0.3
+0.8
-1.8
+0.5
-0.1
carbon source
L-Valine (C)
-0.3
-0.2
+0.3
-0.7
+0.0
stress
Cobalt chloride 0.32 mM
-0.1
-0.2
-0.9
+0.5
-0.2
denitrifying
Nitrate reduction, replicate B
-0.1
-1.2
+0.4
+0.0
+0.1
stress
Tetracycline 0.0016 mg/ml
-0.5
+0.1
-0.6
+0.3
+0.0
carbon source
L-Alanine (C)
+0.2
+0.2
-0.1
-1.0
+0.1
carbon source
L-Proline (C)
+0.3
-0.1
-0.8
+0.2
+0.1
carbon source
acetate (C)
+0.5
-0.7
+0.5
-0.4
-0.2
nitrogen source
L-Histidine (N)
-0.0
-0.7
+0.6
-0.3
+0.3
stress
nitrate 200 mM
-0.2
+0.2
+0.5
-0.5
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.8
+0.0
-0.8
-0.0
nitrogen source
L-Glutamine (N)
-0.1
-0.4
+1.0
-0.4
-0.0
nitrogen source
L-Arginine (N)
-0.1
-0.4
+0.3
+0.6
+0.1
stress
Thallium(I) acetate 0.016 mg/ml
-0.2
+0.4
+0.7
-0.5
+0.1
stress
Cisplatin 0.006 mg/ml
+0.3
+0.4
+0.2
-0.9
+0.6
carbon source
L-Ornithine
-0.1
+0.7
-0.6
+0.8
-0.2
carbon source
L-Ornithine
-0.1
+0.7
-0.2
+0.5
-0.2
lb
LB
-0.3
+0.8
+0.9
-0.7
-0.0
stress
Thallium(I) acetate 0.016 mg/ml
-0.0
+0.9
+0.6
-0.2
+0.1
carbon source
L-Asparagine (C)
+0.0
+0.2
+0.7
+0.6
-0.0
carbon source
L-Proline (C)
-0.0
+0.4
+0.9
+0.1
+0.2
survival
4C survival; 672 hrs
+0.2
+0.8
+0.4
+0.3
+0.2
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