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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_03145 and AO353_03150 are separated by 122 nucleotides
AO353_03150 and AO353_03155 are separated by 76 nucleotides
AO353_03155 and AO353_03160 are separated by 268 nucleotides
AO353_03160 and AO353_03165 are separated by 278 nucleotides
AO353_03145: AO353_03145 - glycerophosphodiester phosphodiesterase, at 671,264 to 672,391
_03145
AO353_03150: AO353_03150 - peptidase M4, at 672,514 to 672,834
_03150
AO353_03155: AO353_03155 - hypothetical protein, at 672,911 to 673,282
_03155
AO353_03160: AO353_03160 - chemotaxis protein, at 673,551 to 675,176
_03160
AO353_03165: AO353_03165 - magnesium transporter CorA, at 675,455 to 676,477
_03165
Group
Condition
AO353
_03145
AO353
_03150
AO353
_03155
AO353
_03160
AO353
_03165
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
-2.6
+0.2
-0.0
N.D.
carbon source
L-Ornithine
+0.3
-1.6
-0.5
-0.0
N.D.
stress
Lomefloxacin 0.001 mM
-0.7
-0.1
-0.4
-0.2
N.D.
carbon source
L-Phenylalanine (C)
+0.1
-1.3
+0.2
-0.0
N.D.
nitrogen source
Inosine (N)
+0.2
-1.3
+0.1
+0.0
N.D.
carbon source
L-Malic (C)
+0.2
-0.9
-0.1
-0.1
N.D.
nitrogen source
L-Serine (N)
+0.1
-0.7
+0.0
-0.1
N.D.
carbon source
acetate (C)
+0.3
-0.9
-0.4
+0.4
N.D.
carbon source
Tween 20 (C)
+0.3
-1.1
+0.1
-0.0
N.D.
stress
Thallium(I) acetate 0.016 mg/ml
-0.1
-0.8
+0.1
+0.2
N.D.
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
+0.2
-0.9
+0.2
+0.1
N.D.
carbon source
L-Aspartic Acid (C)
+0.2
-0.6
-0.1
+0.1
N.D.
stress
Benzalkonium Chloride 0.01 mg/ml
+0.2
-0.3
-0.3
+0.1
N.D.
stress
Spectinomycin 0.15 mg/ml
+0.2
-0.5
-0.1
+0.1
N.D.
carbon source
Ethanol (C)
+0.3
-0.4
-0.4
+0.2
N.D.
nitrogen source
Gly-Glu (N)
+0.3
-0.5
-0.2
+0.1
N.D.
stress
sodium fluoride 6.25 mM
+0.1
-0.6
-0.0
+0.4
N.D.
motility
outer cut, LB soft agar motility assay
+0.3
-0.5
-0.1
+0.1
N.D.
carbon source
propionate (C)
+0.5
-0.4
-0.3
+0.0
N.D.
stress
Cisplatin 0.006 mg/ml
-0.5
+0.2
-0.2
+0.3
N.D.
stress
Paraquat dichloride 0.032 mg/mL
+0.1
-0.7
+0.1
+0.5
N.D.
motility
outer cut, LB soft agar motility assay
-0.2
-0.3
+0.3
+0.2
N.D.
carbon source
L-Citrulline
+0.5
-0.7
+0.4
+0.1
N.D.
stress
acetate 68 mM
+0.3
+0.5
-0.1
-0.2
N.D.
temperature
LB 30C
-0.1
+0.7
+0.2
-0.2
N.D.
stress
Benzalkonium Chloride 0.012 mg/ml
+0.4
+0.4
-0.1
-0.1
N.D.
carbon source
D-Trehalose (C)
+0.2
+0.4
+0.2
+0.1
N.D.
survival
4C survival; 360 hrs
+0.2
+0.5
+0.0
+0.2
N.D.
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.4
+0.7
+0.1
+0.0
N.D.
stress
Sisomicin 0.008 mg/ml
+0.6
+0.1
+0.3
+0.3
N.D.
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