Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_03105 and AO353_03110 are separated by 83 nucleotidesAO353_03110 and AO353_03115 are separated by 202 nucleotidesAO353_03115 and AO353_03120 are separated by 163 nucleotidesAO353_03120 and AO353_03125 overlap by 16 nucleotides AO353_03105: AO353_03105 - XRE family transcriptional regulator, at 665,714 to 666,034 _03105 AO353_03110: AO353_03110 - hydrolase, at 666,118 to 667,173 _03110 AO353_03115: AO353_03115 - TetR family transcriptional regulator, at 667,376 to 667,990 _03115 AO353_03120: AO353_03120 - hypothetical protein, at 668,154 to 668,693 _03120 AO353_03125: AO353_03125 - LysR family transcriptional regulator, at 668,678 to 669,577 _03125
Group Condition AO353_03105 AO353_03110 AO353_03115 AO353_03120 AO353_03125
carbon source L-Citrulline +0.1 -1.2 -0.2 -0.2 -0.3
carbon source L-Aspartic Acid (C) -0.5 -0.4 +0.1 -0.8 +0.3
carbon source L-Arginine (C) +0.1 +0.4 -0.8 -0.4 -0.3
stress methylglyoxal 0.009 vol% +0.3 -1.3 +0.2 +0.2 -0.3
carbon source L-Citrulline -0.4 -0.5 +0.2 +0.4 -0.6
motility outer cut, LB soft agar motility assay -0.3 -0.4 -0.3 -0.3 +0.5
stress Benzalkonium Chloride 0.012 mg/ml -0.0 -0.7 +0.4 -0.4 +0.1
motility outer cut, LB soft agar motility assay +0.6 -0.8 -0.9 +0.0 +0.4
carbon source L-Ornithine -0.1 -0.5 +0.4 -0.6 +0.4
stress Benzethonium chloride 0.025 mM -0.4 -0.7 +0.7 +0.1 -0.1
carbon source L-Asparagine (C) -0.2 +0.5 -0.9 +0.0 +0.1
carbon source L-Leucine (C) -0.4 -0.5 +0.6 +0.1 -0.1
stress Spectinomycin 0.1 mg/ml +0.0 +0.2 +0.6 -0.9 +0.1
stress Gentamicin 0.006 mg/ml -0.3 -0.1 +0.4 -0.4 +0.5
carbon source L-Valine (C) +0.1 +0.7 -0.6 -0.1 +0.2
pH Minimal media pH8 +0.2 +0.3 -0.7 +0.6 -0.1
carbon source L-Alanine (C) -0.2 +0.7 -0.3 -0.1 +0.4
pH Minimal media pH9 -0.1 +0.4 -0.8 +0.4 +0.6
stress Spectinomycin 0.2 mg/ml -0.2 +0.2 +0.6 -0.3 +0.3
survival 4C survival; 360 hrs -0.2 +0.0 +1.2 -0.2 -0.1
stress Sisomicin 0.008 mg/ml -0.0 -0.4 +0.8 -0.0 +0.4
stress Cisplatin 0.006 mg/ml -1.0 -0.2 +0.1 +1.1 +0.8
stress Fusidic 0.125 mg/ml -0.2 -0.3 +2.0 +0.1 +0.1
denitrifying Nitrate reduction, replicate C +0.1 +0.2 +0.9 +0.4 +0.1
stress Chloramphenicol 0.0025 mg/ml -0.1 +0.2 +0.9 +0.3 +0.4
stress Lomefloxacin 0.001 mM +0.5 -0.8 +2.0 +0.4 +0.3
stress Tetracycline 0.0016 mg/ml -0.2 +0.2 +2.1 +0.2 +0.1
survival 4C survival; 672 hrs +0.3 -0.4 +2.2 +0.6 -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron +0.8 +0.6 +1.1 +0.0 +0.3
stress Doxycycline hyclate 0.0006 mg/ml +0.3 -0.7 +2.9 -0.3 +0.7
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