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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_02970 and AO353_02975 are separated by 183 nucleotides
AO353_02975 and AO353_02980 are separated by 90 nucleotides
AO353_02980 and AO353_02985 are separated by 146 nucleotides
AO353_02985 and AO353_02990 are separated by 506 nucleotides
AO353_02970: AO353_02970 - carbon storage regulator, at 628,594 to 628,782
_02970
AO353_02975: AO353_02975 - aspartate kinase, at 628,966 to 630,207
_02975
AO353_02980: AO353_02980 - alanine--tRNA ligase, at 630,298 to 632,919
_02980
AO353_02985: AO353_02985 - threonine aldolase, at 633,066 to 634,070
_02985
AO353_02990: AO353_02990 - 6,7-dimethyl-8-ribityllumazine synthase, at 634,577 to 635,086
_02990
Group
Condition
AO353
_02970
AO353
_02975
AO353
_02980
AO353
_02985
AO353
_02990
pH
Minimal media pH8
-0.4
-3.6
N.D.
-0.1
-0.0
carbon source
acetate (C)
-0.2
-2.8
N.D.
-0.0
-1.0
pH
Minimal media pH6
-0.6
-3.6
N.D.
-0.1
+0.2
pH
Minimal media pH7
-0.7
-3.2
N.D.
-0.1
+0.1
carbon source
D-Serine (C)
-1.3
-2.6
N.D.
-0.1
+0.4
carbon source
a-Ketoglutaric (C)
-0.8
-2.5
N.D.
-0.0
-0.2
nitrogen source
D-Serine (N)
-0.5
-3.0
N.D.
-0.2
+0.3
nitrogen source
L-Threonine (N)
+0.4
-3.5
N.D.
-0.3
+0.1
carbon source
m-Inositol (C)
-1.8
-1.4
N.D.
-0.0
-0.1
nitrogen source
L-Glutamine (N)
-0.1
-3.6
N.D.
-0.1
+0.5
nitrogen source
Parabanic Acid (N)
-1.1
-2.0
N.D.
-0.2
+0.0
motility
outer cut, LB soft agar motility assay
-1.4
-1.3
N.D.
-0.1
-0.2
stress
Nickel (II) chloride 0.625 mM
-1.7
-0.8
N.D.
-0.1
-0.4
carbon source
a-Ketoglutaric (C)
-0.3
-2.3
N.D.
+0.0
-0.3
carbon source
D-Gluconic Acid (C)
-1.0
-1.9
N.D.
+0.1
+0.1
pH
Minimal media pH8
-0.1
-2.5
N.D.
-0.0
-0.1
nitrogen source
D-Alanine (N)
-0.6
-2.2
N.D.
-0.1
+0.3
nitrogen source
L-Citrulline (N)
-0.6
-2.2
N.D.
-0.0
+0.3
nitrogen source
L-Threonine (N)
+0.3
-2.3
N.D.
-0.3
-0.1
carbon source
D,L-Lactate (C)
-0.5
-2.3
N.D.
+0.0
+0.3
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
-0.8
-1.8
N.D.
-0.1
+0.2
carbon source
D,L-Lactate (C)
-0.9
-1.7
N.D.
+0.1
+0.1
carbon source
D-Glucose
-1.9
-1.0
N.D.
+0.0
+0.5
nitrogen source
L-Glutamine (N)
+0.0
-2.5
N.D.
+0.0
+0.2
nitrogen source
Carnitine Hydrochloride (N)
-0.1
-2.4
N.D.
-0.0
+0.4
carbon source
L-Alanine (C)
+0.5
-2.8
N.D.
-0.0
+0.8
carbon source
L-Ornithine
-2.0
+0.0
N.D.
+0.1
+0.6
stress
Paraquat dichloride 0.032 mg/mL
+1.2
-1.9
N.D.
+0.3
-0.1
carbon source
L-Serine (C)
-1.2
+1.3
N.D.
+0.1
-0.1
carbon source
L-Ornithine
-1.5
+1.0
N.D.
+0.3
+0.5
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