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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_02850 and AO353_02855 are separated by 15 nucleotides
AO353_02855 and AO353_02860 are separated by 3 nucleotides
AO353_02860 and AO353_02865 are separated by 249 nucleotides
AO353_02865 and AO353_02870 are separated by 45 nucleotides
AO353_02850: AO353_02850 - flagellar biosynthesis protein FlgD, at 607,323 to 608,051
_02850
AO353_02855: AO353_02855 - flagellar basal-body rod protein FlgC, at 608,067 to 608,510
_02855
AO353_02860: AO353_02860 - flagellar biosynthesis protein FlgB, at 608,514 to 608,921
_02860
AO353_02865: AO353_02865 - chemotaxis protein, at 609,171 to 609,998
_02865
AO353_02870: AO353_02870 - chemotaxis protein CheW, at 610,044 to 610,976
_02870
Group
Condition
AO353
_02850
AO353
_02855
AO353
_02860
AO353
_02865
AO353
_02870
motility
outer cut, LB soft agar motility assay
-0.8
-2.7
-3.5
-3.0
-0.3
motility
outer cut, LB soft agar motility assay
-1.9
-2.7
-2.8
-2.1
-0.5
motility
outer cut, LB soft agar motility assay
-1.4
-2.4
-3.0
-2.0
-0.5
survival
4C survival; 360 hrs
-1.0
-1.7
-2.9
-1.6
-0.1
survival
4C survival; 192 hrs
-0.7
-1.3
-2.0
-1.0
-0.4
survival
4C survival; 672 hrs
-0.9
-1.5
-1.4
-1.3
-0.0
stress
Cobalt chloride 0.32 mM
-0.2
-0.4
-0.4
+0.1
-0.5
pH
Minimal media pH9
+0.2
-0.0
-0.6
-0.1
-0.2
stress
Cholin acetate 10 mM
-0.1
+0.2
-0.5
+0.2
+0.3
carbon source
L-Ornithine
+0.0
+0.6
-0.4
+0.1
-0.3
carbon source
L-Citrulline
-0.1
+0.4
-0.2
+0.4
-0.3
stress
Benzalkonium Chloride 0.012 mg/ml
-0.2
+0.6
-0.4
+0.2
+0.1
carbon source
L-Valine (C)
-0.5
+0.1
+0.4
+0.4
+0.0
stress
nitrate 200 mM
+0.1
-0.4
+0.4
+0.2
+0.1
carbon source
L-Ornithine
+0.3
+0.0
-0.1
+0.5
-0.3
carbon source
Trisodium citrate (C)
-0.3
+0.3
+0.5
+0.0
-0.0
stress
Rifampicin 0.005 mg/ml
-0.2
+0.7
+0.6
-0.3
-0.1
stress
Cholin acetate 38 mM
-0.2
+0.2
+0.3
+0.3
+0.2
stress
Thallium(I) acetate 0.016 mg/ml
+0.0
+0.2
+0.5
+0.4
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
+0.4
+0.7
+0.0
-0.4
nitrogen source
Parabanic Acid (N)
+0.0
+0.6
+0.4
+0.2
-0.2
stress
methylglyoxal 0.009 vol%
+0.2
-0.2
+0.2
+0.3
+0.5
nitrogen source
Inosine (N)
+0.3
+0.5
+0.5
-0.1
-0.1
carbon source
L-Ornithine
+0.4
+0.2
+0.6
+0.2
-0.2
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.0
+0.6
+0.3
+0.3
+0.0
carbon source
a-Ketoglutaric (C)
+0.3
+0.5
+0.7
+0.2
-0.1
denitrifying
Nitrate reduction, replicate C
-0.1
+0.6
+1.0
+0.4
-0.2
stress
Doxycycline hyclate 0.0006 mg/ml
+0.2
+0.5
+0.7
+0.1
+0.3
carbon source
D-Glucosamine Hydrochloride (C)
+0.4
+0.9
+0.9
-0.0
-0.1
nitrogen source
Urea (N)
+0.4
+0.7
+0.9
+0.0
+0.3
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