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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_02795 and AO353_02800 are separated by 145 nucleotides
AO353_02800 and AO353_02805 are separated by 336 nucleotides
AO353_02805 and AO353_02810 are separated by 30 nucleotides
AO353_02810 and AO353_02815 overlap by 4 nucleotides
AO353_02795: AO353_02795 - carnitine dehydratase, at 591,669 to 592,850
_02795
AO353_02800: AO353_02800 - C4-dicarboxylate transporter, at 592,996 to 594,330
_02800
AO353_02805: AO353_02805 - AraC family transcriptional regulator, at 594,667 to 595,665
_02805
AO353_02810: AO353_02810 - histidine kinase, at 595,696 to 597,042
_02810
AO353_02815: AO353_02815 - transcriptional regulator, at 597,039 to 597,716
_02815
Group
Condition
AO353
_02795
AO353
_02800
AO353
_02805
AO353
_02810
AO353
_02815
carbon source
Fumarate (C)
-0.1
-3.5
-0.5
-1.2
+0.1
carbon source
succinate (C)
+0.1
-3.0
-0.1
-1.9
+0.2
carbon source
Fumarate (C)
+0.2
-3.6
-0.5
-1.0
+0.3
carbon source
succinate (C)
+0.0
-3.1
-0.0
-1.4
+0.1
carbon source
L-Malic (C)
+0.2
-2.6
-0.1
-1.1
+0.2
carbon source
L-Malic (C)
+0.1
-2.4
-0.2
-0.7
+0.0
stress
Lomefloxacin 0.001 mM
+0.0
+0.1
-0.0
-0.7
-2.1
stress
Polymyxin B sulfate 4 mg/ml
+0.0
-0.1
-0.1
-1.0
-1.0
carbon source
a-Ketoglutaric (C)
-0.0
-0.7
+0.1
-1.4
-0.1
stress
Tetracycline 0.0008 mg/ml
+0.0
-0.3
+0.1
-0.8
-1.1
stress
Nickel (II) chloride 0.625 mM
+0.1
-0.6
-0.0
-2.4
+0.9
stress
Benzalkonium Chloride 0.012 mg/ml
-0.3
+0.2
-0.4
+0.2
-1.5
carbon source
propionate (C)
+0.1
+0.2
-0.0
-2.0
+0.0
stress
Cobalt chloride 0.16 mM
-0.0
+0.1
-0.1
-2.0
+0.4
carbon source
D-Lactate (C)
+0.2
-0.1
-0.1
-1.9
+0.3
stress
Cobalt chloride 0.16 mM
-0.1
-0.3
-0.0
-1.8
+0.6
carbon source
butyrate (C)
-0.0
+0.1
+0.2
-1.6
-0.3
carbon source
L-Phenylalanine (C)
-0.3
+0.1
+0.3
-1.7
+0.0
stress
Doxycycline hyclate 0.0006 mg/ml
+0.2
+0.2
+0.0
-0.6
-1.4
stress
Cobalt chloride 0.32 mM
-0.0
+0.0
+0.0
-2.0
+0.5
carbon source
D-Trehalose (C)
+0.1
+0.3
-0.1
-1.9
+0.1
motility
outer cut, LB soft agar motility assay
-0.5
-0.1
+0.3
-1.3
+0.3
carbon source
D-Trehalose (C)
+0.2
+0.4
+0.1
-2.0
+0.1
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
+0.1
+0.2
-0.2
-1.8
+0.7
stress
Cisplatin 0.006 mg/ml
-0.3
-0.3
-0.6
+1.0
-0.4
stress
nitrate 200 mM
-0.2
+0.2
+0.2
+0.8
-1.4
stress
Nickel (II) chloride 0.625 mM
+0.0
-0.3
+0.2
-1.2
+0.9
carbon source
acetate (C)
+0.3
+0.9
+0.4
-1.1
+0.2
stress
Fusidic 0.125 mg/ml
-0.3
-0.5
+0.2
+0.0
+1.4
stress
Cisplatin 0.006 mg/ml
-0.2
-0.0
+0.0
+1.7
-0.6
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