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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_02710 and AO353_02715 are separated by 122 nucleotides
AO353_02715 and AO353_02720 overlap by 1 nucleotides
AO353_02720 and AO353_02725 are separated by 210 nucleotides
AO353_02725 and AO353_02730 are separated by 37 nucleotides
AO353_02710: AO353_02710 - (p)ppGpp synthetase, at 574,778 to 577,021
_02710
AO353_02715: AO353_02715 - 23S rRNA methyltransferase, at 577,144 to 578,496
_02715
AO353_02720: AO353_02720 - cysteine synthase, at 578,496 to 579,398
_02720
AO353_02725: AO353_02725 - histidine kinase, at 579,609 to 580,298
_02725
AO353_02730: AO353_02730 - transcriptional regulator, at 580,336 to 581,058
_02730
Group
Condition
AO353
_02710
AO353
_02715
AO353
_02720
AO353
_02725
AO353
_02730
pH
Minimal media pH9
-3.8
+0.0
-3.9
+0.1
-0.7
pH
Minimal media pH8
-3.7
-0.5
-2.6
-0.1
+0.0
carbon source
Carnitine Hydrochloride (C)
-3.5
-0.7
-2.8
+0.2
+0.1
nitrogen source
Uridine (N)
-3.6
-0.8
-2.2
+0.1
-0.2
carbon source
L-Leucine (C)
-2.6
-1.7
-2.4
+0.1
-0.0
pH
Minimal media pH9
-3.7
-0.1
-3.0
+0.3
-0.1
carbon source
L-Isoleucine (C)
-3.4
-0.7
-2.5
-0.2
+0.2
nitrogen source
L-Tryptophan (N)
-3.7
-0.7
-2.2
-0.1
+0.2
carbon source
D-Lactate (C)
-3.7
-0.1
-2.2
-0.2
-0.2
nitrogen source
NAG (N)
-3.5
-1.2
-1.6
-0.0
+0.1
carbon source
L-Alanine (C)
-3.1
-0.9
-2.2
+0.2
-0.1
nitrogen source
L-Serine (N)
-2.9
-1.4
-1.5
-0.1
-0.3
nitrogen source
Carnitine Hydrochloride (N)
-3.5
-0.4
-2.4
-0.1
+0.2
nitrogen source
nitrite (N)
-3.5
-0.4
-2.4
+0.1
+0.2
carbon source
D-Serine (C)
-3.3
-0.2
-2.5
-0.0
+0.1
nitrogen source
D-Alanine (N)
-3.7
-0.4
-2.1
+0.0
+0.2
nitrogen source
D-Serine (N)
-3.6
-0.8
-1.7
+0.0
+0.4
carbon source
Tween 20 (C)
-3.0
-0.5
-2.2
+0.1
-0.1
nitrogen source
nitrate (N)
-3.9
-0.8
-1.3
+0.1
+0.3
carbon source
L-Valine (C)
-2.6
-0.5
-2.4
-0.0
-0.1
pH
Minimal media pH8
-3.4
-0.5
-1.6
-0.0
+0.1
nitrogen source
L-Threonine (N)
-3.3
-0.5
-1.4
+0.0
-0.1
carbon source
D-Lactate (C)
-3.4
+0.1
-2.0
-0.1
+0.1
carbon source
L-Histidine (C)
-2.7
-0.8
-1.7
+0.1
-0.2
nitrogen source
Gly-Glu (N)
-3.4
-0.7
-1.0
-0.3
+0.3
pH
Minimal media pH6
-2.4
-0.1
-3.0
+0.2
+0.2
nitrogen source
Thymine (N)
-3.6
-0.3
-1.2
+0.1
+0.2
nitrogen source
L-tyrosine (N)
-3.5
+0.2
-1.2
-0.1
+0.4
carbon source
propionate (C)
-1.3
+0.8
-3.0
+0.1
+0.1
carbon source
propionate (C)
-1.5
+1.4
-2.5
-0.0
-0.0
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