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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_02610 and AO353_02615 are separated by 12 nucleotides
AO353_02615 and AO353_02620 overlap by 4 nucleotides
AO353_02620 and AO353_02625 overlap by 8 nucleotides
AO353_02625 and AO353_02630 overlap by 4 nucleotides
AO353_02610: AO353_02610 - adenosylcobinamide kinase, at 556,830 to 557,351
_02610
AO353_02615: AO353_02615 - cobyric acid synthase, at 557,364 to 558,815
_02615
AO353_02620: AO353_02620 - threonine-phosphate decarboxylase, at 558,812 to 559,804
_02620
AO353_02625: AO353_02625 - cobalamin biosynthesis protein CobD, at 559,797 to 560,705
_02625
AO353_02630: AO353_02630 - 5,6-dimethylbenzimidazole synthase, at 560,702 to 561,352
_02630
Group
Condition
AO353
_02610
AO353
_02615
AO353
_02620
AO353
_02625
AO353
_02630
nitrogen source
Adenosine (N)
-3.2
-2.8
-1.7
-2.3
-0.0
nitrogen source
L-Glutamic (N)
-1.9
-2.2
-1.9
-1.9
-0.8
nitrogen source
L-Glutamine (N)
-2.2
-2.0
-1.7
-2.2
-0.2
nitrogen source
L-Glutamine (N)
-1.5
-2.0
-1.5
-2.0
-0.8
nitrogen source
L-Glutamic (N)
-2.0
-2.0
-1.2
-1.9
-0.0
nitrogen source
L-Histidine (N)
-1.6
-1.7
-1.9
-1.5
-0.5
nitrogen source
L-Histidine (N)
-1.7
-1.4
-1.4
-1.7
-0.4
nitrogen source
Glycine (N)
-2.2
-2.0
-0.5
-1.6
-0.0
nitrogen source
Putrescine (N)
-1.1
-1.0
-0.5
-1.1
-1.1
nitrogen source
Glycine (N)
-1.5
-1.3
-0.2
-1.7
+0.1
nitrogen source
L-Arginine (N)
-1.5
-1.0
-0.6
-1.1
-0.1
pH
Minimal media pH6
-1.4
-1.0
-0.9
-0.7
-0.2
nitrogen source
nitrite (N)
-0.8
-1.2
-0.5
-1.2
-0.2
nitrogen source
L-Arginine (N)
-0.9
-0.8
-0.8
-1.1
-0.0
nitrogen source
L-Serine (N)
-0.8
-0.6
-0.5
-0.8
-0.9
pH
Minimal media pH8
-0.7
-0.8
-0.7
-0.7
-0.7
nitrogen source
D-Serine (N)
-0.8
-0.8
-0.6
-1.0
-0.5
nitrogen source
L-Citrulline (N)
-0.5
-1.0
-0.8
-1.0
-0.3
nitrogen source
Carnitine Hydrochloride (N)
-0.9
-0.8
-0.2
-1.0
-0.4
pH
Minimal media pH7
-0.7
-0.9
-1.2
-0.6
+0.1
carbon source
D-Serine (C)
-0.8
-0.5
-0.6
-1.4
+0.1
pH
Minimal media pH6
-0.6
-0.7
-0.9
-0.8
-0.2
carbon source
L-Alanine (C)
-0.9
-0.8
-1.0
-0.4
+0.0
nitrogen source
Ammonium chloride (N)
-0.8
-0.7
-0.5
-0.6
-0.2
pH
Minimal media pH8
-0.5
-0.8
-0.5
-0.6
-0.4
carbon source
Carnitine Hydrochloride (C)
-0.6
-0.4
-0.3
-0.7
-0.7
motility
outer cut, LB soft agar motility assay
-0.4
-1.1
+0.9
+0.3
+0.7
stress
Sisomicin 0.008 mg/ml
+0.8
+0.5
+0.6
-0.4
-0.5
carbon source
L-Ornithine
+0.4
+0.6
+0.8
-0.0
-0.9
motility
outer cut, LB soft agar motility assay
-0.5
-0.1
+0.6
+0.6
+1.0
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