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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_02570 and AO353_02575 are separated by 278 nucleotides
AO353_02575 and AO353_02580 are separated by 145 nucleotides
AO353_02580 and AO353_02585 are separated by 205 nucleotides
AO353_02585 and AO353_02590 are separated by 77 nucleotides
AO353_02570: AO353_02570 - hypothetical protein, at 550,091 to 550,315
_02570
AO353_02575: AO353_02575 - hypothetical protein, at 550,594 to 551,076
_02575
AO353_02580: AO353_02580 - Long-chain fatty acid transport protein, at 551,222 to 552,493
_02580
AO353_02585: AO353_02585 - MFS transporter, at 552,699 to 553,907
_02585
AO353_02590: AO353_02590 - MarR family transcriptional regulator, at 553,985 to 554,389
_02590
Group
Condition
AO353
_02570
AO353
_02575
AO353
_02580
AO353
_02585
AO353
_02590
carbon source
L-Tryptophan (C)
-0.8
+0.3
-1.8
-0.2
+0.1
carbon source
L-Valine (C)
-0.4
-0.2
-1.9
-0.0
+0.1
stress
Cobalt chloride 0.32 mM
-2.6
+0.2
+0.0
-0.1
+0.2
stress
Tetracycline 0.0016 mg/ml
-2.9
+0.1
+0.2
-0.0
+0.6
carbon source
L-Citrulline (C)
-0.1
+0.2
-1.1
-0.2
-0.7
carbon source
L-Ornithine
-1.3
+0.3
-0.4
+0.2
-0.6
stress
Tetracycline 0.0008 mg/ml
-2.3
+0.2
+0.1
+0.1
+0.1
stress
Cholin acetate 19 mM
-0.8
-0.2
+0.1
+0.0
-0.7
stress
Spectinomycin 0.15 mg/ml
-2.2
-0.2
+0.3
+0.1
+0.5
carbon source
L-Ornithine
-1.9
+0.4
-0.6
+0.0
+0.5
carbon source
Putrescine (C)
+0.5
-0.1
-1.5
-0.1
-0.3
stress
Cisplatin 0.006 mg/ml
+0.4
-0.5
-0.5
+0.2
-0.8
carbon source
L-Leucine (C)
+0.5
+0.5
-1.9
-0.3
-0.1
nitrogen source
Inosine (N)
-0.9
+0.0
+0.3
-0.2
-0.5
stress
Cisplatin 0.006 mg/ml
-1.3
+0.6
+0.0
-0.2
-0.3
carbon source
L-Phenylalanine (C)
-0.6
-0.3
-0.5
-0.2
+0.4
carbon source
L-Citrulline
+0.3
+0.3
-0.9
+0.0
-0.7
survival
4C survival; 192 hrs
-1.8
+0.1
+0.6
+0.2
-0.1
stress
methylglyoxal 0.009 vol%
-1.0
+0.3
-0.4
+0.1
+0.0
carbon source
L-Citrulline
-1.1
+0.3
-0.6
+0.2
+0.4
stress
Paraquat dichloride 0.032 mg/mL
-1.0
-0.1
-0.1
+0.2
+0.4
survival
4C survival; 360 hrs
-1.9
+0.3
+1.2
+0.2
-0.2
denitrifying
Nitrate reduction, replicate C
+0.4
-0.1
+0.2
+0.3
-1.0
motility
outer cut, LB soft agar motility assay
-0.8
-0.2
-0.0
-0.2
+1.0
motility
outer cut, LB soft agar motility assay
-1.4
+0.2
+0.3
+0.2
+0.6
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.6
+0.3
-0.1
-0.8
+0.3
carbon source
D-Glucose
-0.5
-0.0
+0.6
+0.1
+0.5
survival
4C survival; 672 hrs
-1.6
+0.1
+2.7
+0.5
-0.0
stress
Cobalt chloride 0.16 mM
+0.7
+0.2
+0.1
+0.1
+0.6
carbon source
acetate (C)
+0.8
+0.0
+0.4
+0.4
+0.8
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