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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_02445 and AO353_02450 are separated by 47 nucleotides
AO353_02450 and AO353_02455 overlap by 8 nucleotides
AO353_02455 and AO353_02460 are separated by 229 nucleotides
AO353_02460 and AO353_02465 are separated by 0 nucleotides
AO353_02445: AO353_02445 - diguanylate phosphodiesterase, at 521,597 to 523,372
_02445
AO353_02450: AO353_02450 - hypothetical protein, at 523,420 to 523,794
_02450
AO353_02455: AO353_02455 - type IV secretion protein Rhs, at 523,787 to 528,595
_02455
AO353_02460: AO353_02460 - hypothetical protein, at 528,825 to 529,226
_02460
AO353_02465: AO353_02465 - hypothetical protein, at 529,227 to 529,598
_02465
Group
Condition
AO353
_02445
AO353
_02450
AO353
_02455
AO353
_02460
AO353
_02465
carbon source
propionate (C)
-0.2
-0.2
+0.0
-0.2
-3.3
carbon source
L-Alanine (C)
-0.3
-1.0
-0.0
-0.2
-1.4
motility
outer cut, LB soft agar motility assay
-0.8
-0.4
-0.0
-0.9
-0.6
stress
Cisplatin 0.006 mg/ml
-0.4
+0.3
-0.2
-1.1
-1.2
stress
Cisplatin 0.006 mg/ml
-0.6
-0.4
+0.2
-0.3
-1.5
carbon source
L-Aspartic Acid (C)
+0.0
-0.5
+0.0
-0.4
-1.8
carbon source
propionate (C)
-0.0
-0.3
+0.2
-0.0
-2.4
motility
outer cut, LB soft agar motility assay
-0.4
-1.4
-0.1
+0.3
-0.9
carbon source
a-Ketoglutaric (C)
-0.1
-0.4
-0.0
-0.1
-1.8
nitrogen source
L-Histidine (N)
+0.3
-0.1
-0.0
+0.1
-2.7
carbon source
a-Ketoglutaric (C)
-0.2
-0.4
+0.0
-0.6
-1.2
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
-0.1
+0.1
-0.2
-1.9
stress
Doxycycline hyclate 0.0006 mg/ml
-0.4
+0.1
-0.3
-0.2
-1.3
carbon source
D-Lactate (C)
-0.3
-0.2
+0.1
-0.3
-1.3
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
-0.1
-0.4
-0.0
+0.1
-1.5
stress
Thallium(I) acetate 0.016 mg/ml
-0.1
-0.1
+0.1
-0.1
-1.6
carbon source
L-Serine (C)
+0.2
-0.2
-0.1
-0.5
-1.0
carbon source
L-Phenylalanine (C)
+0.1
-0.3
+0.1
-0.0
-1.5
stress
Furfuryl Alcohol 0.25 vol%
+0.2
-0.8
-0.0
+0.4
-0.6
carbon source
L-Ornithine
-0.2
-1.3
+0.0
+0.4
+1.1
carbon source
L-Ornithine
+0.1
-1.0
+0.0
+0.3
+0.7
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.8
+0.0
-0.1
+0.1
+1.1
stress
Lomefloxacin 0.001 mM
+0.2
-0.7
-0.1
-0.4
+1.5
carbon source
L-Citrulline
+0.1
-0.6
-0.0
+0.1
+1.4
carbon source
L-Ornithine
+0.2
-0.4
-0.1
+0.4
+1.2
stress
Benzalkonium Chloride 0.012 mg/ml
+0.1
-0.6
+0.0
+0.2
+1.5
carbon source
L-Citrulline
+0.1
+0.2
+0.1
-0.2
+1.8
carbon source
L-Citrulline
-0.7
+0.4
-0.0
+0.4
+1.9
pH
Minimal media pH9
+0.2
+0.8
+0.0
+0.8
+0.5
survival
4C survival; 672 hrs
-0.0
-0.1
-0.0
+0.2
+2.8
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