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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_02325 and AO353_02330 are separated by 89 nucleotides
AO353_02330 and AO353_02335 are separated by 121 nucleotides
AO353_02335 and AO353_02340 are separated by 51 nucleotides
AO353_02340 and AO353_02345 are separated by 188 nucleotides
AO353_02325: AO353_02325 - OHCU decarboxylase, at 494,376 to 494,891
_02325
AO353_02330: AO353_02330 - allantoicase, at 494,981 to 495,976
_02330
AO353_02335: AO353_02335 - ureidoglycolate hydrolase, at 496,098 to 496,601
_02335
AO353_02340: AO353_02340 - hypothetical protein, at 496,653 to 497,960
_02340
AO353_02345: AO353_02345 - purine permease, at 498,149 to 499,507
_02345
Group
Condition
AO353
_02325
AO353
_02330
AO353
_02335
AO353
_02340
AO353
_02345
nitrogen source
Adenine (N)
-3.6
-2.8
-2.1
-1.9
-0.3
nitrogen source
Inosine (N)
-2.2
-2.8
-1.0
-0.5
+0.2
nitrogen source
Adenosine (N)
-2.3
-1.5
-0.2
-0.8
-0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.1
-3.4
-0.4
-0.1
+0.1
carbon source
L-Phenylalanine (C)
-0.3
-1.3
+0.4
+0.0
-0.7
carbon source
propionate (C)
-0.6
-0.4
-0.5
-0.3
-0.1
nitrogen source
Parabanic Acid (N)
-0.8
-0.8
-0.3
+0.1
+0.2
stress
Cisplatin 0.006 mg/ml
-0.0
-0.2
+0.3
-0.5
-1.2
carbon source
m-Inositol (C)
-0.4
-0.7
-0.6
-0.0
+0.4
stress
copper (II) chloride 2.5 mM
+0.0
-1.4
+0.3
+0.1
+0.1
carbon source
L-Tryptophan (C)
-0.4
+0.2
+0.3
-0.1
-0.8
temperature
LB 30C
+0.1
-1.1
+0.0
-0.1
+0.3
carbon source
acetate (C)
+0.3
-0.8
+0.3
-0.2
-0.1
carbon source
D-Glucose
-0.4
+0.3
+0.5
-0.3
-0.6
carbon source
L-Arginine (C)
+0.3
-0.8
+0.1
-0.0
+0.4
carbon source
L-Citrulline
+0.4
+0.2
+0.3
-0.2
-0.7
stress
Cobalt chloride 0.32 mM
+0.0
+0.9
-0.2
-0.3
-0.2
carbon source
L-Citrulline
+0.1
+0.7
+0.7
-0.3
-1.0
carbon source
acetate (C)
+0.5
-0.3
+0.5
-0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.4
-1.1
+0.5
+0.0
+0.5
stress
Lomefloxacin 0.001 mM
+0.3
+0.7
-0.4
-0.4
+0.1
carbon source
L-Valine (C)
+0.1
+0.7
+0.4
-0.1
-0.7
stress
Doxycycline hyclate 0.0006 mg/ml
+0.5
+1.2
+0.4
-0.4
-0.9
denitrifying
Nitrate reduction, replicate C
+0.9
-0.3
+0.3
-0.1
+0.3
carbon source
L-Ornithine
-0.2
+0.4
+1.1
-0.1
-0.1
survival
4C survival; 672 hrs
+0.3
-0.6
+1.0
+0.3
+0.2
carbon source
L-Ornithine
-0.1
+0.6
+0.8
-0.1
+0.2
stress
perchlorate 75 mM
+0.3
+0.5
+0.9
-0.1
-0.0
carbon source
L-Citrulline
+0.4
+0.5
+0.5
+0.1
+0.4
motility
outer cut, LB soft agar motility assay
+0.4
+0.8
+0.7
-0.0
+0.9
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