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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_02315 and AO353_02320 are separated by 436 nucleotides
AO353_02320 and AO353_02325 overlap by 4 nucleotides
AO353_02325 and AO353_02330 are separated by 89 nucleotides
AO353_02330 and AO353_02335 are separated by 121 nucleotides
AO353_02315: AO353_02315 - 5-hydroxyisourate hydrolase, at 492,663 to 493,016
_02315
AO353_02320: AO353_02320 - allantoinase, at 493,453 to 494,379
_02320
AO353_02325: AO353_02325 - OHCU decarboxylase, at 494,376 to 494,891
_02325
AO353_02330: AO353_02330 - allantoicase, at 494,981 to 495,976
_02330
AO353_02335: AO353_02335 - ureidoglycolate hydrolase, at 496,098 to 496,601
_02335
Group
Condition
AO353
_02315
AO353
_02320
AO353
_02325
AO353
_02330
AO353
_02335
nitrogen source
Adenine (N)
-3.2
-3.1
-3.6
-2.8
-2.1
nitrogen source
Inosine (N)
-1.2
-2.8
-2.2
-2.8
-1.0
nitrogen source
Adenosine (N)
-1.3
-2.4
-2.3
-1.5
-0.2
nitrogen source
Parabanic Acid (N)
+0.0
-2.2
-0.8
-0.8
-0.3
carbon source
Uridine (C)
-0.5
-2.1
+0.1
-0.2
-0.4
carbon source
m-Inositol (C)
-0.6
-0.6
-0.4
-0.7
-0.6
carbon source
Glycerol (C)
-0.3
-2.0
-0.1
-0.5
+0.1
carbon source
Glycerol (C)
-0.0
-2.1
-0.4
-0.3
+0.1
carbon source
D-Trehalose (C)
-0.0
-1.4
-0.4
-0.6
+0.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.4
+0.9
+0.1
-3.4
-0.4
carbon source
propionate (C)
-0.6
-0.6
-0.2
-0.4
-0.4
carbon source
propionate (C)
-0.4
-0.2
-0.6
-0.4
-0.5
carbon source
L-Leucine (C)
-0.3
-1.1
-0.6
+0.1
+0.1
carbon source
acetate (C)
-1.0
-0.5
+0.3
-0.8
+0.3
carbon source
L-Phenylalanine (C)
+0.2
-0.5
-0.3
-1.3
+0.4
pH
Minimal media pH9
-0.3
-1.3
+0.4
+0.0
-0.4
carbon source
L-Ornithine
-0.3
-1.0
-0.5
-0.3
+0.6
carbon source
acetate (C)
-0.7
-1.2
+0.5
-0.3
+0.5
motility
outer cut, LB soft agar motility assay
-0.5
-1.1
+0.1
-0.2
+0.6
motility
outer cut, LB soft agar motility assay
-0.3
-0.4
+0.4
-1.1
+0.5
survival
4C survival; 672 hrs
+0.3
-1.7
+0.3
-0.6
+1.0
stress
Cisplatin 0.006 mg/ml
-0.9
-0.4
+0.4
+0.3
+0.2
carbon source
L-Citrulline
-0.8
-0.8
+0.1
+0.7
+0.7
denitrifying
Nitrate reduction, replicate C
-0.6
-0.2
+0.9
-0.3
+0.3
carbon source
L-Valine (C)
-0.0
-0.9
+0.1
+0.7
+0.4
carbon source
L-Citrulline
-0.3
-0.7
+0.4
+0.5
+0.5
carbon source
L-Ornithine
-0.4
-0.2
-0.2
+0.4
+1.1
carbon source
L-Ornithine
-0.0
-0.6
-0.1
+0.6
+0.8
stress
Doxycycline hyclate 0.0006 mg/ml
-0.5
-0.4
+0.5
+1.2
+0.4
stress
Lomefloxacin 0.001 mM
+0.4
+0.3
+0.3
+0.7
-0.4
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