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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_02135 and AO353_02140 are separated by 270 nucleotides
AO353_02140 and AO353_02145 are separated by 13 nucleotides
AO353_02145 and AO353_02150 are separated by 192 nucleotides
AO353_02150 and AO353_02155 are separated by 119 nucleotides
AO353_02135: AO353_02135 - hypothetical protein, at 458,668 to 459,609
_02135
AO353_02140: AO353_02140 - BolA family transcriptional regulator, at 459,880 to 460,179
_02140
AO353_02145: AO353_02145 - hypothetical protein, at 460,193 to 460,717
_02145
AO353_02150: AO353_02150 - fumarate hydratase, at 460,910 to 462,304
_02150
AO353_02155: AO353_02155 - hypothetical protein, at 462,424 to 463,386
_02155
Group
Condition
AO353
_02135
AO353
_02140
AO353
_02145
AO353
_02150
AO353
_02155
carbon source
D-Lactate (C)
-0.3
-2.6
-1.6
+0.0
+0.0
carbon source
D-Lactate (C)
-0.1
-2.0
-1.4
+0.2
-0.0
carbon source
L-Valine (C)
-0.0
-0.6
-1.3
-1.1
-0.0
carbon source
L-Isoleucine (C)
-0.3
-0.5
-0.9
-0.7
-0.4
stress
Thallium(I) acetate 0.016 mg/ml
-0.7
-1.5
-1.3
+0.8
-0.1
carbon source
L-Lactate (C)
-0.2
-1.5
-1.0
-0.1
+0.0
stress
Thallium(I) acetate 0.016 mg/ml
-0.3
-1.6
-1.2
+0.5
+0.1
carbon source
D,L-Lactate (C)
-0.2
-0.8
-0.8
-0.1
+0.0
stress
Thallium(I) acetate 0.008 mg/ml
-0.5
-1.1
-0.6
+0.5
-0.2
carbon source
D,L-Lactate (C)
-0.1
-1.1
-0.5
-0.2
+0.1
carbon source
L-Lactate (C)
-0.1
-1.4
-0.8
+0.4
+0.1
carbon source
D-Serine (C)
+0.1
-0.3
-0.4
-1.1
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
-0.7
-1.0
+0.5
-0.2
carbon source
L-Ornithine
-0.3
-0.3
+0.3
-1.0
-0.3
carbon source
L-Ornithine
-0.7
-0.2
-0.2
-0.5
+0.2
stress
Paraquat dichloride 0.032 mg/mL
-1.1
+0.2
-0.8
+0.4
-0.1
carbon source
L-Citrulline
-0.3
-0.2
+0.3
-1.0
-0.1
survival
4C survival; 672 hrs
-0.8
-0.8
+0.3
-0.2
+0.1
stress
Polymyxin B sulfate 4 mg/ml
-0.0
-0.3
-1.2
+0.4
-0.0
carbon source
D-Trehalose (C)
-0.9
-0.5
-0.1
+0.4
-0.0
motility
outer cut, LB soft agar motility assay
-0.4
-0.7
-0.3
+0.6
-0.1
stress
Lomefloxacin 0.001 mM
+0.6
+0.0
-0.6
-0.6
-0.1
carbon source
L-Alanine (C)
-0.0
-0.6
-0.4
+0.9
-0.3
carbon source
L-Tryptophan (C)
+0.3
-1.0
+0.0
+0.6
-0.2
carbon source
acetate (C)
-0.7
-0.3
+0.6
+0.4
-0.1
carbon source
propionate (C)
+1.4
-0.4
-0.9
-0.4
+0.2
carbon source
L-Ornithine
-1.3
+0.5
+0.8
+0.4
-0.2
stress
methylglyoxal 0.009 vol%
+0.2
+0.9
+0.8
-1.0
-0.3
stress
Sisomicin 0.008 mg/ml
-0.8
+1.6
+1.4
-0.4
-0.1
carbon source
Cytidine (C)
+1.0
+0.3
+0.4
+0.3
-0.2
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