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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_02110 and AO353_02115 are separated by 111 nucleotides
AO353_02115 and AO353_02120 are separated by 45 nucleotides
AO353_02120 and AO353_02125 are separated by 211 nucleotides
AO353_02125 and AO353_02130 overlap by 8 nucleotides
AO353_02110: AO353_02110 - hypothetical protein, at 451,670 to 452,596
_02110
AO353_02115: AO353_02115 - TenA family transcriptional regulator, at 452,708 to 453,502
_02115
AO353_02120: AO353_02120 - hypothetical protein, at 453,548 to 456,007
_02120
AO353_02125: AO353_02125 - ABC transporter ATP-binding protein, at 456,219 to 458,036
_02125
AO353_02130: AO353_02130 - disulfide bond formation protein DsbA, at 458,029 to 458,664
_02130
Group
Condition
AO353
_02110
AO353
_02115
AO353
_02120
AO353
_02125
AO353
_02130
carbon source
L-Citrulline
-0.0
-0.1
-0.3
-0.3
-2.0
carbon source
L-Ornithine
+0.1
-0.1
-0.2
+0.2
-2.1
carbon source
L-Phenylalanine (C)
-0.3
+0.0
-0.2
-0.7
-0.7
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.2
+0.2
+0.1
-0.2
-2.1
carbon source
D-Glucose
-0.0
-0.5
-0.2
-0.2
-0.5
carbon source
L-Citrulline
-0.0
-0.0
-0.5
+0.5
-0.6
stress
methylglyoxal 0.009 vol%
-0.6
+0.0
-0.1
-0.4
+0.7
stress
Cisplatin 0.006 mg/ml
-0.7
+0.2
-0.0
-0.6
+0.8
motility
outer cut, LB soft agar motility assay
+0.3
-0.4
-0.8
+2.1
-1.4
stress
Sisomicin 0.008 mg/ml
+0.7
-0.0
-0.0
-0.2
-0.4
stress
nitrate 200 mM
+0.1
-0.0
-0.5
+0.9
-0.2
nitrogen source
Inosine (N)
+0.2
-0.2
-0.4
+0.3
+0.4
carbon source
pyruvate (C)
+0.3
-0.2
-0.3
+0.6
-0.1
carbon source
a-Ketoglutaric (C)
+0.5
+0.0
-0.1
+0.4
-0.4
carbon source
Trisodium citrate (C)
+0.3
+0.1
+0.1
+0.7
-0.6
pH
Minimal media pH6
+0.1
+0.3
+0.7
-0.2
-0.3
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.2
+0.4
+0.4
-0.2
-0.1
nitrogen source
Urea (N)
+0.1
-0.0
-0.5
+0.5
+0.8
pH
Minimal media pH7
-0.1
+0.4
+0.7
-0.1
+0.1
stress
acetate 68 mM
+0.2
+0.6
+0.7
-0.1
-0.4
carbon source
L-Tryptophan (C)
+0.5
+0.0
-0.2
+0.4
+0.3
survival
4C survival; 360 hrs
+0.2
+0.4
+0.6
+0.2
-0.3
stress
acetate 34 mM
-0.3
+0.5
+0.6
+0.1
+0.2
stress
1-ethyl-3-methylimidazolium acetate 15 mM
+0.0
+0.5
+0.7
-0.0
+0.1
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.1
+0.3
+0.6
-0.1
+0.6
stress
Cholin acetate 10 mM
+0.2
+0.4
+0.5
+0.1
+0.3
motility
outer cut, LB soft agar motility assay
+0.3
+0.1
-0.7
+2.4
-0.2
stress
Cholin acetate 38 mM
+0.1
+0.6
+0.7
+0.0
+0.6
motility
outer cut, LB soft agar motility assay
+0.6
+0.1
-0.8
+2.1
-0.1
survival
4C survival; 672 hrs
+0.6
+0.7
+2.2
+0.0
+0.3
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