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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_01535 and AO353_01540 are separated by 57 nucleotides
AO353_01540 and AO353_01545 are separated by 975 nucleotides
AO353_01545 and AO353_01550 are separated by 35 nucleotides
AO353_01550 and AO353_01555 are separated by 19 nucleotides
AO353_01535: AO353_01535 - amino acid ABC transporter permease, at 327,650 to 328,378
_01535
AO353_01540: AO353_01540 - ABC transporter substrate-binding protein, at 328,436 to 329,215
_01540
AO353_01545: AO353_01545 - secretin, at 330,191 to 331,432
_01545
AO353_01550: AO353_01550 - hypothetical protein, at 331,468 to 332,178
_01550
AO353_01555: AO353_01555 - hypothetical protein, at 332,198 to 332,470
_01555
Group
Condition
AO353
_01535
AO353
_01540
AO353
_01545
AO353
_01550
AO353
_01555
carbon source
D-Ribose (C)
+0.1
+0.0
-0.1
-3.2
N.D.
carbon source
L-Citrulline
-0.3
-0.3
+0.3
-2.6
N.D.
carbon source
Putrescine (C)
+0.1
+0.1
+0.0
-3.1
N.D.
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
-0.2
+0.1
-2.6
N.D.
carbon source
butyrate (C)
+0.1
-0.2
-0.2
-2.5
N.D.
carbon source
D-Fructose (C)
-0.0
+0.2
+0.1
-2.8
N.D.
carbon source
D-Ribose (C)
+0.1
+0.1
+0.1
-2.8
N.D.
carbon source
Uridine (C)
-0.0
-0.3
-0.3
-1.8
N.D.
carbon source
L-Valine (C)
+0.3
-0.1
-0.0
-2.5
N.D.
carbon source
L-Citrulline
-0.0
+0.1
+0.1
-2.3
N.D.
nitrogen source
Gly-DL-Asp (N)
+0.1
-0.2
-0.2
-1.7
N.D.
carbon source
acetate (C)
-0.4
-0.7
+0.3
-1.1
N.D.
stress
Doxycycline hyclate 0.0006 mg/ml
-0.3
-0.7
+0.1
-0.9
N.D.
carbon source
m-Inositol (C)
-0.0
-0.2
+0.1
-1.7
N.D.
carbon source
Glycerol (C)
-0.1
+0.2
-0.2
-1.8
N.D.
carbon source
L-Arginine (C)
-0.0
+0.1
-0.0
-1.7
N.D.
nitrogen source
Thymine (N)
+0.2
+0.0
+0.0
-1.8
N.D.
carbon source
L-Proline (C)
+0.1
+0.2
-0.0
-1.8
N.D.
carbon source
D-Fructose (C)
-0.1
+0.3
+0.2
-1.6
N.D.
carbon source
L-Citrulline
+0.3
-0.0
+0.3
-1.8
N.D.
nitrogen source
L-Lysine (N)
+0.1
+0.8
-0.1
-2.0
N.D.
carbon source
Trisodium citrate (C)
+0.2
+0.4
-0.0
-1.7
N.D.
carbon source
L-Citrulline
+0.5
-0.3
-0.1
-1.2
N.D.
carbon source
Ethanol (C)
+0.2
+0.3
-0.2
-1.3
N.D.
carbon source
propionate (C)
+0.1
+0.2
+0.2
-1.5
N.D.
carbon source
L-Leucine (C)
+0.0
+0.5
+0.1
-1.5
N.D.
carbon source
L-Ornithine
+0.1
-0.8
+0.4
-0.6
N.D.
nitrogen source
L-Lysine (N)
+0.3
+0.8
+0.0
-1.8
N.D.
carbon source
D-Glucose
-0.4
+0.3
-0.4
+0.9
N.D.
nitrogen source
Parabanic Acid (N)
+0.2
-0.3
+0.1
+1.7
N.D.
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