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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_01295 and AO353_01300 are separated by 45 nucleotides
AO353_01300 and AO353_01305 are separated by 17 nucleotides
AO353_01305 and AO353_01310 are separated by 248 nucleotides
AO353_01310 and AO353_01315 are separated by 140 nucleotides
AO353_01295: AO353_01295 - alpha/beta hydrolase, at 281,846 to 282,718
_01295
AO353_01300: AO353_01300 - proteophosphoglycan precursor, at 282,764 to 283,324
_01300
AO353_01305: AO353_01305 - hypothetical protein, at 283,342 to 283,947
_01305
AO353_01310: AO353_01310 - radical SAM protein, at 284,196 to 285,164
_01310
AO353_01315: AO353_01315 - TetR family transcriptional regulator, at 285,305 to 285,943
_01315
Group
Condition
AO353
_01295
AO353
_01300
AO353
_01305
AO353
_01310
AO353
_01315
motility
outer cut, LB soft agar motility assay
+0.1
-0.3
-2.8
+0.5
-0.2
motility
outer cut, LB soft agar motility assay
+0.1
-0.1
-2.3
+0.4
-0.7
survival
4C survival; 672 hrs
+0.2
+0.1
-1.4
-0.2
-1.3
survival
4C survival; 360 hrs
+0.1
+0.1
-0.6
-0.2
-0.9
motility
outer cut, LB soft agar motility assay
+0.4
+0.4
-2.5
+0.7
-0.4
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-0.0
-0.4
-0.1
-1.2
+0.4
carbon source
Tween 20 (C)
+0.1
+0.1
+0.0
-0.2
-1.3
stress
Rifampicin 0.005 mg/ml
-0.1
+0.1
-0.5
-0.4
-0.2
stress
Lomefloxacin 0.001 mM
-0.2
+0.1
-0.1
-0.6
-0.4
nitrogen source
Adenosine (N)
-0.0
+0.1
+0.1
-0.8
-0.4
carbon source
L-Citrulline
-0.4
+0.3
+0.1
-0.1
-0.7
carbon source
propionate (C)
+0.1
+0.0
-0.2
+0.4
-1.2
carbon source
L-Citrulline
+0.3
+0.3
-0.6
-0.6
-0.0
carbon source
Tween 20 (C)
+0.0
+0.1
+0.1
+0.3
-1.1
nitrogen source
Adenine (N)
-0.1
-0.0
+0.1
-0.8
+0.4
nitrogen source
nitrate (N)
-0.1
+0.1
+0.2
-0.8
+0.2
carbon source
acetate (C)
-0.2
-0.3
+0.3
+0.5
-0.6
carbon source
D-Glucose
-0.0
+0.2
-0.2
-0.5
+0.5
stress
Choline Lysine 12 mM
+0.3
-0.0
-0.2
-0.2
+0.5
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.1
+0.1
-0.6
+0.2
+0.6
stress
Cholin acetate 19 mM
+0.1
-0.0
-0.5
+0.3
+0.5
denitrifying
Nitrate reduction, replicate B
+0.3
-0.1
-0.4
+0.4
+0.5
carbon source
L-Citrulline
+0.3
+0.4
-0.3
+0.0
+0.3
pH
Minimal media pH9
+0.2
-0.1
-0.1
+0.4
+0.6
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
+0.2
+0.1
-0.1
-0.2
+1.4
nitrogen source
Parabanic Acid (N)
+0.2
+0.2
+0.5
+0.3
+0.3
stress
Benzalkonium Chloride 0.012 mg/ml
+0.0
+0.1
-0.0
+0.3
+1.3
carbon source
L-Citrulline
-0.2
+0.4
+0.1
+0.9
+0.5
pH
Minimal media pH9
+0.2
+0.3
+0.0
+0.8
+0.6
carbon source
butyrate (C)
+0.2
-2.3
+0.5
+0.8
+3.3
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