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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_00885 and AO353_00890 are separated by 54 nucleotides
AO353_00890 and AO353_00895 are separated by 200 nucleotides
AO353_00895 and AO353_00900 are separated by 67 nucleotides
AO353_00900 and AO353_00905 overlap by 4 nucleotides
AO353_00885: AO353_00885 - 3-methylitaconate isomerase, at 200,114 to 201,304
_00885
AO353_00890: AO353_00890 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 201,359 to 203,953
_00890
AO353_00895: AO353_00895 - 2-methylcitrate synthase, at 204,154 to 205,281
_00895
AO353_00900: AO353_00900 - 2-methylisocitrate lyase, at 205,349 to 206,242
_00900
AO353_00905: AO353_00905 - GntR family transcriptional regulator, at 206,239 to 206,961
_00905
Group
Condition
AO353
_00885
AO353
_00890
AO353
_00895
AO353
_00900
AO353
_00905
carbon source
propionate (C)
-3.6
-2.9
-4.2
-4.2
-3.5
carbon source
L-Isoleucine (C)
-3.2
-3.7
-3.4
-3.2
-2.5
carbon source
propionate (C)
-2.1
-2.1
-3.6
-3.1
-3.3
carbon source
L-Valine (C)
-2.3
-3.2
-3.5
-3.1
-2.0
nitrogen source
Thymine (N)
-1.2
-1.8
-0.4
-1.2
-0.7
nitrogen source
L-Threonine (N)
-1.8
-1.7
+0.2
-2.0
-0.1
motility
outer cut, LB soft agar motility assay
-1.1
-1.8
-0.9
+0.1
-0.1
carbon source
L-Leucine (C)
+0.0
-2.0
-1.6
-0.2
-0.1
nitrogen source
L-Threonine (N)
-0.5
-1.4
+0.2
-1.8
-0.1
carbon source
D-Trehalose (C)
-0.9
-1.0
-0.4
-1.3
-0.1
carbon source
D-Trehalose (C)
-0.8
-0.6
-0.7
-1.5
+0.1
carbon source
L-Citrulline (C)
-0.8
-2.6
+0.7
-0.4
-0.1
motility
outer cut, LB soft agar motility assay
-0.0
-1.3
-1.0
+0.2
-0.8
carbon source
D-Alanine (C)
+0.2
-1.8
-1.3
-0.2
+0.1
carbon source
L-Tryptophan (C)
+0.3
-1.2
+0.1
-0.1
-1.1
stress
Sisomicin 0.008 mg/ml
-1.1
-1.1
+0.2
-1.1
+1.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
-1.0
-0.4
+0.2
-1.1
+0.5
stress
Doxycycline hyclate 0.0006 mg/ml
+0.5
-0.5
+0.1
-0.2
+1.8
survival
4C survival; 672 hrs
+1.2
+1.0
+1.5
-0.9
-0.5
carbon source
L-Citrulline
+0.4
+0.3
-0.8
+1.9
+0.8
carbon source
L-Serine (C)
+0.3
+1.5
+0.6
+0.7
-0.1
carbon source
L-Citrulline
+0.6
+0.5
-0.1
+2.0
+0.6
carbon source
L-Citrulline
+1.0
+0.5
+0.3
+2.2
-0.0
carbon source
L-Citrulline
+1.1
+0.3
+0.4
+1.9
+1.1
carbon source
D-Glucose
+1.6
+1.5
-0.4
+2.0
+0.7
carbon source
L-Ornithine
+1.4
+2.1
-0.5
+2.7
+0.1
carbon source
L-Ornithine
+1.4
+1.5
-0.2
+2.6
+0.5
carbon source
D-Glucose
+1.5
+1.9
+0.2
+1.9
+0.5
carbon source
L-Ornithine
+1.6
+1.8
-0.7
+2.9
+0.9
carbon source
L-Ornithine
+1.7
+2.7
-0.3
+3.7
+1.8
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