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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_00730 and AO353_00735 overlap by 8 nucleotides
AO353_00735 and AO353_00740 are separated by 141 nucleotides
AO353_00740 and AO353_00745 are separated by 24 nucleotides
AO353_00745 and AO353_00750 are separated by 168 nucleotides
AO353_00730: AO353_00730 - FAD-binding molybdopterin dehydrogenase, at 158,859 to 160,313
_00730
AO353_00735: AO353_00735 - xanthine dehydrogenase, at 160,306 to 162,705
_00735
AO353_00740: AO353_00740 - molybdenum cofactor sulfurylase, at 162,847 to 163,689
_00740
AO353_00745: AO353_00745 - guanine deaminase, at 163,714 to 165,018
_00745
AO353_00750: AO353_00750 - GntR family transcriptional regulator, at 165,187 to 165,951
_00750
Group
Condition
AO353
_00730
AO353
_00735
AO353
_00740
AO353
_00745
AO353
_00750
carbon source
acetate (C)
-0.1
-0.7
-0.8
-0.3
-2.4
carbon source
acetate (C)
-0.3
-0.4
-0.7
-0.4
-2.0
nitrogen source
Adenosine (N)
-0.7
-0.9
-1.1
-0.0
-1.2
nitrogen source
Adenine (N)
-0.9
-0.9
-0.7
-0.0
-1.1
motility
outer cut, LB soft agar motility assay
+0.2
+0.1
-0.1
-0.6
-3.0
carbon source
propionate (C)
-0.2
-0.6
-0.6
-0.2
-1.5
carbon source
butyrate (C)
+0.0
-0.1
+0.1
-0.1
-3.1
carbon source
L-Leucine (C)
-0.7
-0.2
-0.1
+0.1
-2.2
carbon source
D-Lactate (C)
-0.2
-0.0
+0.1
+0.0
-2.8
nitrogen source
Inosine (N)
-0.4
-0.7
-0.8
-0.0
-0.9
carbon source
D-Trehalose (C)
-0.0
+0.1
-0.1
-0.0
-2.6
motility
outer cut, LB soft agar motility assay
-0.1
+0.1
+0.0
-0.1
-2.6
pH
Minimal media pH9
-0.2
-0.0
+0.1
+0.5
-2.9
carbon source
Trisodium citrate (C)
-0.3
-0.0
+0.2
-0.1
-2.2
carbon source
L-Citrulline (C)
+0.1
+0.0
-0.1
-0.1
-2.3
carbon source
L-Phenylalanine (C)
-0.4
-0.1
-0.1
+0.2
-2.1
carbon source
propionate (C)
-0.7
-0.6
-0.7
-0.4
-0.0
carbon source
Glycerol (C)
-0.2
+0.1
-0.1
+0.0
-2.1
pH
Minimal media pH9
-0.1
+0.2
-0.3
+0.5
-2.5
carbon source
Uridine (C)
+0.2
+0.1
+0.4
-0.2
-2.7
carbon source
Glycerol (C)
-0.2
+0.1
-0.1
-0.1
-1.9
nitrogen source
L-Arginine (N)
+0.1
-0.0
-0.3
-0.3
-1.6
nitrogen source
nitrite (N)
-0.1
+0.1
-0.0
+0.1
-2.0
pH
Minimal media pH8
-0.1
+0.0
+0.2
+0.2
-2.2
carbon source
L-Citrulline
-0.0
-0.1
+0.4
+0.2
-2.5
pH
Minimal media pH6
+0.0
+0.1
-0.0
+0.3
-2.2
carbon source
D-Trehalose (C)
-0.2
+0.0
+0.3
-0.1
-1.7
survival
4C survival; 672 hrs
-0.0
+0.2
+0.3
+0.1
-2.0
carbon source
L-Citrulline
+0.5
+0.1
-0.0
+0.2
-1.9
carbon source
D-Glucose
+0.3
-0.1
+0.5
+0.4
-1.2
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