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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_00340 and AO353_00345 are separated by 246 nucleotides
AO353_00345 and AO353_00350 are separated by 61 nucleotides
AO353_00350 and AO353_00355 are separated by 155 nucleotides
AO353_00355 and AO353_00360 overlap by 1 nucleotides
AO353_00340: AO353_00340 - chromosome partitioning protein ParA, at 62,086 to 62,349
_00340
AO353_00345: AO353_00345 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 62,596 to 63,426
_00345
AO353_00350: AO353_00350 - copper-binding protein, at 63,488 to 64,045
_00350
AO353_00355: AO353_00355 - transcriptional regulator, at 64,201 to 64,881
_00355
AO353_00360: AO353_00360 - ATPase, at 64,881 to 66,242
_00360
Group
Condition
AO353
_00340
AO353
_00345
AO353
_00350
AO353
_00355
AO353
_00360
stress
copper (II) chloride 2.5 mM
N.D.
-0.3
-0.3
-4.3
+0.5
stress
copper (II) chloride 2.5 mM
N.D.
-0.4
+0.4
-4.1
+0.9
carbon source
pyruvate (C)
N.D.
-0.8
-0.0
-2.2
-0.1
carbon source
L-Leucine (C)
N.D.
-0.6
-0.2
-1.6
-0.4
nitrogen source
Parabanic Acid (N)
N.D.
-0.0
-0.7
+0.0
-2.1
carbon source
acetate (C)
N.D.
-1.5
+0.1
-0.4
-0.5
carbon source
L-Citrulline
N.D.
-0.3
-0.1
-0.5
-1.1
stress
Benzalkonium Chloride 0.01 mg/ml
N.D.
-0.1
+0.5
-0.9
-1.3
carbon source
L-Valine (C)
N.D.
+0.9
+0.2
-2.9
-0.0
stress
1-ethyl-3-methylimidazolium acetate 15 mM
N.D.
-0.3
+0.3
-1.2
-0.2
stress
Paraquat dichloride 0.032 mg/mL
N.D.
-0.8
+0.3
-1.2
+0.3
nitrogen source
L-Histidine (N)
N.D.
-0.4
-0.0
-1.2
+0.3
stress
Benzalkonium Chloride 0.012 mg/ml
N.D.
-0.2
+0.5
-0.0
-1.6
stress
Gentamicin 0.006 mg/ml
N.D.
-0.7
-0.1
-0.9
+0.5
stress
Cobalt chloride 0.16 mM
N.D.
-0.6
+0.3
-1.1
+0.2
nitrogen source
Urea (N)
N.D.
-0.0
-0.6
+0.6
-1.1
stress
Spectinomycin 0.2 mg/ml
N.D.
-0.5
+0.6
-0.0
-1.0
stress
Sisomicin 0.008 mg/ml
N.D.
-1.4
-0.3
+0.3
+0.9
stress
nitrate 200 mM
N.D.
+0.6
+0.3
-1.1
-0.3
carbon source
m-Inositol (C)
N.D.
+0.6
-0.1
-1.2
+0.4
pH
Minimal media pH9
N.D.
+0.4
-0.9
+0.8
-0.4
carbon source
propionate (C)
N.D.
+0.4
+0.2
+0.4
-1.0
carbon source
butyrate (C)
N.D.
+0.5
+0.3
-1.0
+0.5
anaerobic
Anaerobic, acetate donor; nitrate and iron
N.D.
-0.2
-0.9
+1.2
+0.5
stress
Tetracycline 0.0016 mg/ml
N.D.
+1.4
-0.2
+0.0
-0.5
stress
Doxycycline hyclate 0.0006 mg/ml
N.D.
+1.1
+0.1
-0.8
+0.4
survival
4C survival; 672 hrs
N.D.
-0.4
+0.3
+1.2
-0.2
stress
Cisplatin 0.006 mg/ml
N.D.
+0.3
+0.8
+0.8
-0.5
carbon source
Uridine (C)
N.D.
+0.4
+0.4
+0.3
+0.9
stress
methylglyoxal 0.009 vol%
N.D.
+2.0
+0.2
+0.3
-0.0
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