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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_00020 and AO353_00025 are separated by 163 nucleotides
AO353_00025 and AO353_00030 are separated by 47 nucleotides
AO353_00030 and AO353_00035 are separated by 329 nucleotides
AO353_00035 and AO353_00040 are separated by 91 nucleotides
AO353_00020: AO353_00020 - delta-aminolevulinic acid dehydratase, at 3,868 to 4,842
_00020
AO353_00025: AO353_00025 - phenazine biosynthesis protein PhzF, at 5,006 to 5,848
_00025
AO353_00030: AO353_00030 - glutathione S-transferase, at 5,896 to 6,594
_00030
AO353_00035: AO353_00035 - GTP-binding protein, at 6,924 to 7,598
_00035
AO353_00040: AO353_00040 - hypothetical protein, at 7,690 to 8,745
_00040
Group
Condition
AO353
_00020
AO353
_00025
AO353
_00030
AO353
_00035
AO353
_00040
carbon source
acetate (C)
-0.3
-0.5
-0.1
-0.5
-0.6
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.1
-1.3
-0.9
+0.1
+0.2
stress
Rifampicin 0.005 mg/ml
-0.3
-0.4
+0.1
-0.1
-0.7
stress
Fusidic 0.125 mg/ml
-0.7
-0.1
+0.2
-0.3
-0.2
stress
Benzalkonium Chloride 0.01 mg/ml
-0.1
-0.1
-0.6
+0.2
-0.2
stress
Benzalkonium Chloride 0.012 mg/ml
-0.3
-0.4
-0.5
+0.5
-0.0
carbon source
L-Ornithine
+0.4
-0.1
-0.7
-0.1
-0.1
carbon source
L-Citrulline
-0.3
+0.4
-0.9
+0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.3
-0.4
+0.3
+0.1
-0.2
motility
outer cut, LB soft agar motility assay
+0.3
-0.6
+0.3
-0.0
-0.5
stress
Cisplatin 0.006 mg/ml
+0.3
+0.1
-0.9
+0.1
-0.0
stress
nitrate 200 mM
-0.1
-0.0
+0.5
-0.5
-0.3
nitrogen source
Uridine (N)
+0.4
-0.6
+0.1
-0.1
-0.0
stress
Tetracycline 0.0016 mg/ml
+0.2
-0.5
+0.3
+0.0
-0.3
stress
Doxycycline hyclate 0.0006 mg/ml
-0.3
-0.4
+0.8
-0.2
-0.2
carbon source
L-Citrulline
+0.3
-0.3
+0.3
+0.0
-0.4
nitrogen source
Thymine (N)
+0.3
-0.7
+0.1
-0.1
+0.2
stress
Gentamicin 0.006 mg/ml
+0.1
-0.4
+0.8
-0.3
-0.1
stress
Thallium(I) acetate 0.016 mg/ml
+0.7
-0.2
-0.5
+0.2
+0.0
carbon source
L-Citrulline
-0.4
+0.3
+0.5
+0.1
+0.1
stress
Chloramphenicol 0.0025 mg/ml
+0.7
-0.1
-0.1
+0.3
+0.0
stress
methylglyoxal 0.009 vol%
+0.3
+0.9
+0.2
+0.0
-0.5
carbon source
L-Alanine (C)
+0.5
-0.0
+0.5
-0.1
+0.2
carbon source
L-Valine (C)
+0.4
+0.4
-0.2
+0.4
+0.0
carbon source
casaminos (C)
+0.5
-0.1
+0.3
+0.3
-0.0
stress
Sisomicin 0.008 mg/ml
-0.0
-0.5
+3.0
-0.7
-0.6
carbon source
L-Isoleucine (C)
+0.3
+0.3
+0.6
+0.3
-0.3
carbon source
L-Proline (C)
+0.3
+0.5
+0.1
+0.1
+0.2
stress
Paraquat dichloride 0.032 mg/mL
+0.1
+0.3
+0.5
-0.1
+0.3
stress
Cholin acetate 38 mM
+0.0
+0.6
+0.3
+0.3
+0.0
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