Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS23540 and ABZR87_RS23545 are separated by 20 nucleotidesABZR87_RS23545 and ABZR87_RS23550 are separated by 9 nucleotidesABZR87_RS23550 and ABZR87_RS23555 overlap by 23 nucleotidesABZR87_RS23555 and ABZR87_RS23560 are separated by 7 nucleotides ABZR87_RS23540: ABZR87_RS23540 - glycosyltransferase, at 1,640,209 to 1,641,423 _RS23540 ABZR87_RS23545: ABZR87_RS23545 - DUF2334 domain-containing protein, at 1,641,444 to 1,642,238 _RS23545 ABZR87_RS23550: ABZR87_RS23550 - phosphatase PAP2 family protein, at 1,642,248 to 1,642,784 _RS23550 ABZR87_RS23555: ABZR87_RS23555 - glycosyltransferase family 1 protein, at 1,642,762 to 1,643,934 _RS23555 ABZR87_RS23560: ABZR87_RS23560 - hypothetical protein, at 1,643,942 to 1,644,373 _RS23560
Group Condition ABZR87_RS23540 ABZR87_RS23545 ABZR87_RS23550 ABZR87_RS23555 ABZR87_RS23560
carbon source Octanoic (C) -0.2 +0.7 -0.7 -1.5 N.D.
carbon source butyrate (C) -0.6 -0.2 -0.2 -0.4 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 -0.2 -0.5 -0.5 N.D.
nitrogen source nitrogen source nitrate 20mM -0.0 -0.3 -0.6 -0.2 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +0.2 -0.1 -0.5 -0.7 N.D.
carbon source Azelaic (C) -0.3 +0.2 -0.5 -0.4 N.D.
carbon source Octanoic (C) -0.2 +1.0 -0.9 -0.9 N.D.
soil soil EcoFAB sample 2; outgrowth in LB +0.2 -0.1 -0.4 -0.7 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.0 -0.1 -0.2 -0.6 N.D.
carbon source Disodium Glutarate (C) -0.3 -0.5 -0.5 +0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.3 -0.5 -0.5 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.3 -0.2 -0.4 +0.2 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.3 -0.3 -0.1 +0.2 N.D.
nitrogen source nitrogen source nitrate 5mM -0.1 -0.2 -0.4 +0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.1 +0.4 -0.8 N.D.
root root sample 6; outgrowth in LB +0.1 -0.5 +0.3 -0.5 N.D.
carbon source Protocatechuic Acid (C) -0.4 -0.3 -0.4 +0.7 N.D.
carbon source Sebacic (C) +0.0 -0.1 +0.4 -0.4 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.4 -0.2 -0.4 N.D.
carbon source Dodecandioic (C) -0.3 -0.1 +0.2 +0.3 N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.1 +0.3 -0.4 +0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.4 +0.6 -0.2 N.D.
root root sample 5; outgrowth in LB +0.5 +0.1 -0.5 +0.2 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.3 -0.4 +0.4 -0.0 N.D.
carbon source L-Glutamic (C) -0.1 -0.3 +0.5 +0.2 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.3 +0.1 +0.3 +0.3 N.D.
root root EcoFAB sample 2; outgrowth in LB +0.0 +0.3 -0.3 +0.4 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.1 +0.7 -0.3 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.1 +0.2 +0.5 +0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.3 -0.3 +0.6 N.D.
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