Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS23355 and ABZR87_RS23360 are separated by 49 nucleotidesABZR87_RS23360 and ABZR87_RS23365 overlap by 4 nucleotidesABZR87_RS23365 and ABZR87_RS23370 overlap by 4 nucleotidesABZR87_RS23370 and ABZR87_RS23375 overlap by 20 nucleotides ABZR87_RS23355: ABZR87_RS23355 - diguanylate cyclase, at 1,605,797 to 1,606,918 _RS23355 ABZR87_RS23360: ABZR87_RS23360 - chemotaxis response regulator protein-glutamate methylesterase, at 1,606,968 to 1,607,972 _RS23360 ABZR87_RS23365: ABZR87_RS23365 - hybrid sensor histidine kinase/response regulator, at 1,607,969 to 1,610,299 _RS23365 ABZR87_RS23370: ABZR87_RS23370 - chemotaxis protein CheW, at 1,610,296 to 1,610,997 _RS23370 ABZR87_RS23375: ABZR87_RS23375 - CheR family methyltransferase, at 1,610,978 to 1,612,432 _RS23375
Group Condition ABZR87_RS23355 ABZR87_RS23360 ABZR87_RS23365 ABZR87_RS23370 ABZR87_RS23375
carbon source Sebacic (C) +0.2 -1.8 -0.3 -1.6 -0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -2.8 -0.0 +0.3 +0.2
root root sample 5; outgrowth in LB +0.3 -1.5 -0.1 -0.7 +0.0
carbon source Octanoic (C) -0.6 -2.0 +0.3 +0.3 +0.1
phage Ra3_1 -0.1 -0.9 -0.2 -0.4 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.1 -0.2 -0.1 -1.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -1.5 -0.2 -0.2 +0.3
carbon source Valeric (C) -0.2 -0.7 -0.0 -0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -1.0 +0.2 -0.3 -0.3
phage Ra1_0.1 -0.0 -1.3 -0.2 +0.5 -0.1
carbon source Protocatechuic Acid (C) -0.1 -1.7 +0.2 +0.5 +0.0
soil soil EcoFAB sample 1; outgrowth in LB -0.3 +1.5 -0.3 -1.4 -0.5
soil soil sample 6; outgrowth in LB +0.1 -1.2 +0.2 -0.1 +0.1
rhizosphere rhizosphere sample 3; outgrowth in LB +0.2 +0.3 -0.5 -0.5 -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 +0.4 -0.3 -0.6 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.3 -0.4 -0.6 +0.4 -0.2
soil soil sample 3; outgrowth in LB +0.4 -1.2 +0.4 +0.4 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -1.2 -0.0 +1.2 +0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.2 +1.3 -0.1 -0.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +1.2 -0.0 -0.6 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +2.4 +0.4 -1.6 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +1.5 -0.1 -0.0 -0.4
root root EcoFAB sample 1; outgrowth in LB -0.2 +1.3 -0.0 +0.8 -0.1
root root sample 6; outgrowth in LB +0.2 +0.4 +0.7 +0.4 +0.1
rhizosphere rhizosphere sample 8; outgrowth in LB +0.1 +1.6 +0.1 +0.1 +0.2
rhizosphere rhizosphere sample 7; outgrowth in LB +0.2 +0.5 +0.3 +1.0 +0.2
root root sample 4; outgrowth in LB +0.0 +1.0 +0.3 +0.8 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +2.1 -0.1 +0.3 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +2.5 +0.0 +0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +3.3 +0.1 +3.0 +3.4 +3.4
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ABZR87_RS23355
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ABZR87_RS23360
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ABZR87_RS23370
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ABZR87_RS23375
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