Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS23135 and ABZR87_RS23140 are separated by 24 nucleotidesABZR87_RS23140 and ABZR87_RS23145 are separated by 13 nucleotidesABZR87_RS23145 and ABZR87_RS23150 are separated by 77 nucleotidesABZR87_RS23150 and ABZR87_RS23155 are separated by 256 nucleotides ABZR87_RS23135: ABZR87_RS23135 - amidase family protein, at 1,553,302 to 1,554,825 _RS23135 ABZR87_RS23140: ABZR87_RS23140 - RidA family protein, at 1,554,850 to 1,555,206 _RS23140 ABZR87_RS23145: ABZR87_RS23145 - FAD-binding oxidoreductase, at 1,555,220 to 1,556,473 _RS23145 ABZR87_RS23150: ABZR87_RS23150 - glutathione S-transferase family protein, at 1,556,551 to 1,557,210 _RS23150 ABZR87_RS23155: ABZR87_RS23155 - polyhydroxyalkanoate depolymerase, at 1,557,467 to 1,558,822 _RS23155
Group Condition ABZR87_RS23135 ABZR87_RS23140 ABZR87_RS23145 ABZR87_RS23150 ABZR87_RS23155
rhizosphere rhizosphere sample 3; outgrowth in LB -0.2 N.D. -0.1 -0.1 -0.6
nitrogen source nitrogen source nitrate 20mM +0.0 N.D. -0.2 -0.6 -0.2
nitrogen source nitrogen source nitrate 20mM -0.2 N.D. -0.0 -0.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 N.D. -0.3 +0.2 -0.4
carbon source Azelaic (C) +0.0 N.D. -0.0 -0.5 -0.1
nitrogen source nitrogen source nitrate 5mM -0.1 N.D. -0.2 -0.5 +0.2
nitrogen source nitrogen source nitrite 0.5mM +0.0 N.D. +0.2 -0.7 -0.0
soil soil EcoFAB sample 2; outgrowth in LB -0.0 N.D. +0.0 -0.6 +0.1
carbon source Heptanoic (C) -0.2 N.D. -0.2 +0.1 -0.2
carbon source Pimelic (C) +0.2 N.D. +0.0 -0.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 N.D. -0.1 +0.0 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 N.D. -0.4 +0.1 +0.3
carbon source Octanoic (C) +0.1 N.D. -0.4 +0.0 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 N.D. -0.4 +0.1 +0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 N.D. -0.1 -0.6 +0.1
phage Ra1_0.1 -0.2 N.D. -0.1 +0.3 +0.1
root root sample 6; outgrowth in LB +0.1 N.D. +0.3 +0.3 -0.7
nitrogen source nitrogen source nitrate 5mM +0.3 N.D. +0.3 -0.2 -0.3
carbon source Heptanoic (C) -0.1 N.D. +0.1 +0.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. +0.3 -0.4 +0.2
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.2 N.D. -0.2 +0.0 +0.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.1 N.D. -0.2 +0.4 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 N.D. +0.2 +0.0 +0.3
root root sample 5; outgrowth in LB +0.1 N.D. -0.3 -0.1 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 N.D. +0.3 -0.1 -0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 N.D. +0.2 +0.1 +0.4
carbon source Octanoic (C) -0.1 N.D. +0.4 +0.2 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.4 N.D. +0.5 +0.1 -0.1
carbon source Sebacic (C) +0.3 N.D. +0.3 +0.0 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 N.D. +0.2 +0.5 +0.4
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