Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS23035 and ABZR87_RS23040 overlap by 4 nucleotidesABZR87_RS23040 and ABZR87_RS23045 are separated by 96 nucleotidesABZR87_RS23045 and ABZR87_RS23050 are separated by 7 nucleotidesABZR87_RS23050 and ABZR87_RS23055 are separated by 34 nucleotides ABZR87_RS23035: ABZR87_RS23035 - PIG-L family deacetylase, at 1,527,701 to 1,528,423 _RS23035 ABZR87_RS23040: ABZR87_RS23040 - zinc-dependent alcohol dehydrogenase, at 1,528,420 to 1,529,691 _RS23040 ABZR87_RS23045: ABZR87_RS23045 - Nramp family divalent metal transporter, at 1,529,788 to 1,531,059 _RS23045 ABZR87_RS23050: ABZR87_RS23050 - hypothetical protein, at 1,531,067 to 1,531,333 _RS23050 ABZR87_RS23055: ABZR87_RS23055 - YetF domain-containing protein, at 1,531,368 to 1,531,859 _RS23055
Group Condition ABZR87_RS23035 ABZR87_RS23040 ABZR87_RS23045 ABZR87_RS23050 ABZR87_RS23055
rhizosphere rhizosphere sample 2; outgrowth in LB -4.7 -0.7 +0.2 N.D. -0.6
carbon source 4-Hydroxybenzoic Acid (C) -1.1 -0.0 -0.0 N.D. -1.1
soil soil EcoFAB sample 2; outgrowth in LB -0.6 -0.6 -0.1 N.D. -0.9
rhizosphere rhizosphere sample 7; outgrowth in LB -1.9 +0.1 +0.2 N.D. -0.4
root root sample 6; outgrowth in LB -2.1 +0.1 +0.4 N.D. -0.2
root root EcoFAB sample 2; outgrowth in LB +0.1 -0.2 -0.1 N.D. -1.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.4 -0.6 -0.0 N.D. -0.6
carbon source Hexanoic (C) -1.4 +0.1 +0.0 N.D. -0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.6 -0.2 -0.2 N.D. -0.4
carbon source Pimelic (C) -1.1 +0.1 -0.1 N.D. -0.2
soil soil sample 3; outgrowth in LB -0.5 -0.6 +0.1 N.D. -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.6 +0.6 N.D. -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.8 -0.3 N.D. +0.4
phage Ra1_0.01 -0.8 +0.2 -0.1 N.D. -0.2
nitrogen source nitrogen source nitrate 20mM -0.2 +0.4 -0.4 N.D. -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.4 +0.0 +0.4 N.D. +0.3
root root sample 5; outgrowth in LB -0.9 +0.1 +0.5 N.D. -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 -0.4 +0.0 N.D. +0.7
nitrogen source nitrogen source nitrite 0.5mM -1.2 +0.3 +0.0 N.D. +0.4
nitrogen source nitrogen source nitrite 5mM -0.8 +0.1 -0.2 N.D. +0.7
carbon source Sebacic (C) -0.4 +0.5 -0.1 N.D. -0.2
soil soil EcoFAB sample 1; outgrowth in LB -1.3 +0.6 +0.2 N.D. +0.3
carbon source Carbon source D-Glucose 10 mM -0.8 +0.2 +0.1 N.D. +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +0.6 +0.2 N.D. -1.0
micoeukaryotes C.elegans, mixed culture-1 +0.9 -0.2 +0.0 N.D. -0.2
carbon source Octanoic (C) -0.5 +0.5 +0.0 N.D. +0.6
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.3 -0.4 +0.5 N.D. -0.7
carbon source Azelaic (C) -0.2 +0.5 +0.2 N.D. +0.4
nitrogen source nitrogen source nitrate 5mM +0.8 +0.5 +0.1 N.D. +0.2
phage Ra3_1 +1.0 +0.6 +0.1 N.D. +0.3
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