Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS22905 and ABZR87_RS22910 overlap by 20 nucleotidesABZR87_RS22910 and ABZR87_RS22915 overlap by 1 nucleotidesABZR87_RS22915 and ABZR87_RS22920 are separated by 321 nucleotidesABZR87_RS22920 and ABZR87_RS22925 are separated by 49 nucleotides ABZR87_RS22905: ABZR87_RS22905 - glucokinase, at 1,498,174 to 1,499,238 _RS22905 ABZR87_RS22910: ABZR87_RS22910 - 6-phosphogluconolactonase, at 1,499,219 to 1,499,923 _RS22910 ABZR87_RS22915: ABZR87_RS22915 - glucose-6-phosphate dehydrogenase, at 1,499,923 to 1,501,392 _RS22915 ABZR87_RS22920: ABZR87_RS22920 - phosphogluconate dehydratase, at 1,501,714 to 1,503,543 _RS22920 ABZR87_RS22925: ABZR87_RS22925 - YceH family protein, at 1,503,593 to 1,504,291 _RS22925
Group Condition ABZR87_RS22905 ABZR87_RS22910 ABZR87_RS22915 ABZR87_RS22920 ABZR87_RS22925
nitrogen source nitrogen source Ammonium chloride 20mM -0.3 -5.8 -4.9 -6.0 +0.3
nitrogen source nitrogen source nitrate 20mM -0.5 -5.8 -3.3 -6.0 +0.2
carbon source Glycerol (C) -0.2 -5.9 -3.3 -4.7 -0.0
carbon source Carbon source D-Glucose 10 mM -0.2 -5.6 -4.0 -4.1 -0.2
nitrogen source nitrogen source Ammonium chloride 20mM -0.0 -4.0 -4.1 -6.0 +0.2
carbon source Glycerol (C) +0.0 -6.0 -2.9 -5.1 +0.1
carbon source Carbon source D-Glucose 10 mM -0.3 -3.9 -4.6 -4.9 -0.1
nitrogen source nitrogen source nitrate 5mM -0.2 -2.7 -4.5 -6.0 +0.1
nitrogen source nitrogen source nitrate 20mM -0.2 -3.5 -3.8 -4.9 +0.2
carbon source D-Glucose (C) -0.1 -3.6 -3.3 -4.5 -0.0
soil soil EcoFAB sample 2; outgrowth in LB +0.6 -4.5 -1.4 -5.8 -0.2
nitrogen source nitrogen source nitrite 5mM -0.1 -4.7 -2.2 -4.4 +0.3
nitrogen source nitrogen source nitrate 5mM -0.4 -1.6 -3.1 -5.9 +0.0
carbon source D-Glucose (C) -0.4 -2.9 -3.0 -4.4 -0.0
soil soil EcoFAB sample 1; outgrowth in LB +0.5 -3.7 -1.4 -5.5 +0.4
carbon source D-Glucose (C) -0.1 -2.0 -2.9 -4.5 -0.1
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.7 -2.9 -1.9 -4.0 +0.1
carbon source D-Glucose (C) -0.5 -1.4 -3.5 -3.4 +0.3
nitrogen source nitrogen source nitrite 1mM +0.0 -1.4 -2.4 -4.4 -0.2
nitrogen source nitrogen source nitrite 0.5mM -0.3 -3.3 -1.2 -4.0 +0.4
carbon source D-Galactose (C) +0.0 -0.8 -1.9 -5.6 +0.1
carbon source D-Galactose (C) -0.0 -0.2 -2.0 -5.9 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.0 -2.7 -1.2 -4.0 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -3.6 -0.6 -1.7 -0.7
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.6 -0.4 -1.3 -5.9 -0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.6 -0.3 -1.8 -5.8 +0.2
root root EcoFAB sample 2; outgrowth in LB +0.5 -2.3 -1.1 -4.2 +0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.3 -1.3 -1.0 -4.7 -0.0
root root EcoFAB sample 1; outgrowth in LB +1.0 -0.9 -1.0 -5.3 -0.2
root root sample 4; outgrowth in LB +0.6 -2.7 -0.9 -3.3 +0.1
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