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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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500 nt
ABZR87_RS22905 and ABZR87_RS22910 overlap by 20 nucleotides
ABZR87_RS22910 and ABZR87_RS22915 overlap by 1 nucleotides
ABZR87_RS22915 and ABZR87_RS22920 are separated by 321 nucleotides
ABZR87_RS22920 and ABZR87_RS22925 are separated by 49 nucleotides
ABZR87_RS22905: ABZR87_RS22905 - glucokinase, at 1,498,174 to 1,499,238
_RS22905
ABZR87_RS22910: ABZR87_RS22910 - 6-phosphogluconolactonase, at 1,499,219 to 1,499,923
_RS22910
ABZR87_RS22915: ABZR87_RS22915 - glucose-6-phosphate dehydrogenase, at 1,499,923 to 1,501,392
_RS22915
ABZR87_RS22920: ABZR87_RS22920 - phosphogluconate dehydratase, at 1,501,714 to 1,503,543
_RS22920
ABZR87_RS22925: ABZR87_RS22925 - YceH family protein, at 1,503,593 to 1,504,291
_RS22925
Group
Condition
ABZR87
_RS22905
ABZR87
_RS22910
ABZR87
_RS22915
ABZR87
_RS22920
ABZR87
_RS22925
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.3
-5.8
-4.9
-6.0
+0.3
nitrogen source
nitrogen source nitrate 20mM
-0.5
-5.8
-3.3
-6.0
+0.2
carbon source
Glycerol (C)
-0.2
-5.9
-3.3
-4.7
-0.0
carbon source
Carbon source D-Glucose 10 mM
-0.2
-5.6
-4.0
-4.1
-0.2
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.0
-4.0
-4.1
-6.0
+0.2
carbon source
Glycerol (C)
+0.0
-6.0
-2.9
-5.1
+0.1
carbon source
Carbon source D-Glucose 10 mM
-0.3
-3.9
-4.6
-4.9
-0.1
nitrogen source
nitrogen source nitrate 5mM
-0.2
-2.7
-4.5
-6.0
+0.1
nitrogen source
nitrogen source nitrate 20mM
-0.2
-3.5
-3.8
-4.9
+0.2
carbon source
D-Glucose (C)
-0.1
-3.6
-3.3
-4.5
-0.0
soil
soil EcoFAB sample 2; outgrowth in LB
+0.6
-4.5
-1.4
-5.8
-0.2
nitrogen source
nitrogen source nitrite 5mM
-0.1
-4.7
-2.2
-4.4
+0.3
nitrogen source
nitrogen source nitrate 5mM
-0.4
-1.6
-3.1
-5.9
+0.0
carbon source
D-Glucose (C)
-0.4
-2.9
-3.0
-4.4
-0.0
soil
soil EcoFAB sample 1; outgrowth in LB
+0.5
-3.7
-1.4
-5.5
+0.4
carbon source
D-Glucose (C)
-0.1
-2.0
-2.9
-4.5
-0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.7
-2.9
-1.9
-4.0
+0.1
carbon source
D-Glucose (C)
-0.5
-1.4
-3.5
-3.4
+0.3
nitrogen source
nitrogen source nitrite 1mM
+0.0
-1.4
-2.4
-4.4
-0.2
nitrogen source
nitrogen source nitrite 0.5mM
-0.3
-3.3
-1.2
-4.0
+0.4
carbon source
D-Galactose (C)
+0.0
-0.8
-1.9
-5.6
+0.1
carbon source
D-Galactose (C)
-0.0
-0.2
-2.0
-5.9
+0.1
no_plant_rhizosphere
no_plant_rhizosphere sample 3; outgrowth in LB
-0.0
-2.7
-1.2
-4.0
+0.3
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.6
-3.6
-0.6
-1.7
-0.7
rhizosphere
rhizosphere EcoFAB sample 2; outgrowth in LB
+0.6
-0.4
-1.3
-5.9
-0.2
rhizosphere
rhizosphere EcoFAB sample 1; outgrowth in LB
+0.6
-0.3
-1.8
-5.8
+0.2
root
root EcoFAB sample 2; outgrowth in LB
+0.5
-2.3
-1.1
-4.2
+0.1
no_plant_soil
no_plant_soil sample 1; outgrowth in LB
+0.3
-1.3
-1.0
-4.7
-0.0
root
root EcoFAB sample 1; outgrowth in LB
+1.0
-0.9
-1.0
-5.3
-0.2
root
root sample 4; outgrowth in LB
+0.6
-2.7
-0.9
-3.3
+0.1
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