Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS22825 and ABZR87_RS22830 overlap by 4 nucleotidesABZR87_RS22830 and ABZR87_RS22835 overlap by 1 nucleotidesABZR87_RS22835 and ABZR87_RS22840 are separated by 45 nucleotidesABZR87_RS22840 and ABZR87_RS22845 are separated by 35 nucleotides ABZR87_RS22825: ABZR87_RS22825 - 2-dehydropantoate 2-reductase, at 1,483,287 to 1,484,300 _RS22825 ABZR87_RS22830: ABZR87_RS22830 - Crp/Fnr family transcriptional regulator, at 1,484,297 to 1,484,986 _RS22830 ABZR87_RS22835: ABZR87_RS22835 - 2OG-Fe(II) oxygenase, at 1,484,986 to 1,485,378 _RS22835 ABZR87_RS22840: ABZR87_RS22840 - DUF2164 domain-containing protein, at 1,485,424 to 1,485,687 _RS22840 ABZR87_RS22845: ABZR87_RS22845 - alpha,alpha-trehalase TreA, at 1,485,723 to 1,487,336 _RS22845
Group Condition ABZR87_RS22825 ABZR87_RS22830 ABZR87_RS22835 ABZR87_RS22840 ABZR87_RS22845
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 -3.0 +0.0 -0.1 +0.2
carbon source Protocatechuic Acid (C) -0.6 -2.5 +0.3 -0.4 -0.2
rhizosphere rhizosphere sample 3; outgrowth in LB -0.6 -0.5 -0.5 -0.8 -0.2
carbon source Sebacic (C) -0.3 -1.2 -0.2 -0.8 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.4 -0.1 -1.3 -0.1
phage Ra1_0.1 -0.5 -0.9 -0.5 +0.2 +0.0
root root sample 5; outgrowth in LB +0.1 -1.0 -0.6 -0.3 +0.3
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.0 -0.4 -0.4 -0.8 +0.0
carbon source acetate (C) -0.3 -0.2 -0.7 -0.3 +0.0
root root sample 6; outgrowth in LB +0.4 -1.8 -0.3 -0.0 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.1 +0.4 -0.4 -0.3 -0.0
root root sample 4; outgrowth in LB -0.4 -0.9 -0.4 +0.1 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 +0.1 -1.0 +0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 -1.5 -0.1 +0.4 -0.0
root root EcoFAB sample 2; outgrowth in LB -0.0 +0.8 -0.7 -0.7 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -1.4 -0.3 +1.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -1.0 +0.6 +0.4 -0.1
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.4 -0.8 +0.2 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 -0.6 -0.4 +0.2 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.1 -1.0 +1.7 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.3 +0.4 +0.4 -0.5 +0.1
rhizosphere rhizosphere sample 7; outgrowth in LB -0.2 +0.9 -0.6 +0.5 +0.2
nitrogen source nitrogen source nitrate 5mM -0.4 -0.0 +0.6 +0.5 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 +1.4 -0.5 +0.3 +0.1
nitrogen source nitrogen source nitrate 5mM -0.4 +1.1 +0.3 +0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.0 +0.3 +0.7 +0.3
soil soil EcoFAB sample 1; outgrowth in LB +0.4 -0.7 +0.7 +0.4 +0.3
rhizosphere rhizosphere sample 2; outgrowth in LB -0.4 +0.5 +0.8 +0.4 +0.1
carbon source Octanoic (C) +0.2 +1.2 +0.3 +0.5 -0.4
carbon source Octanoic (C) +0.5 +1.4 -0.4 +0.4 +0.0
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ABZR87_RS22825
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ABZR87_RS22830
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