Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS22725 and ABZR87_RS22730 are separated by 99 nucleotidesABZR87_RS22730 and ABZR87_RS22735 are separated by 118 nucleotidesABZR87_RS22735 and ABZR87_RS22740 are separated by 49 nucleotidesABZR87_RS22740 and ABZR87_RS22745 are separated by 16 nucleotides ABZR87_RS22725: ABZR87_RS22725 - aldo/keto reductase family oxidoreductase, at 1,457,613 to 1,458,497 _RS22725 ABZR87_RS22730: ABZR87_RS22730 - LysR family transcriptional regulator, at 1,458,597 to 1,459,472 _RS22730 ABZR87_RS22735: ABZR87_RS22735 - succinylglutamate desuccinylase/aspartoacylase family protein, at 1,459,591 to 1,460,607 _RS22735 ABZR87_RS22740: ABZR87_RS22740 - MFS transporter, at 1,460,657 to 1,462,018 _RS22740 ABZR87_RS22745: ABZR87_RS22745 - MBL fold metallo-hydrolase, at 1,462,035 to 1,462,928 _RS22745
Group Condition ABZR87_RS22725 ABZR87_RS22730 ABZR87_RS22735 ABZR87_RS22740 ABZR87_RS22745
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.3 -1.4 +0.0 -0.1 -0.1
carbon source Carbon source D-Glucose 10 mM -0.1 -0.1 -0.3 -0.4 -0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.2 -0.6 +0.1 -0.3
root root sample 5; outgrowth in LB -0.3 -0.8 -0.1 +0.3 +0.1
root root sample 4; outgrowth in LB -0.2 -0.5 +0.2 -0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.7 -0.0 +0.1 +0.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.5 -0.2 +0.1 +0.3 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.1 -0.3 -0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.2 -0.4 -0.0 +0.1
root root sample 6; outgrowth in LB -0.5 -0.7 +0.7 +0.6 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 +0.3 -0.3 -0.1 -0.1
carbon source Protocatechuic Acid (C) -0.2 -0.3 -0.0 +0.2 +0.1
nitrogen source nitrogen source nitrite 0.5mM +0.1 +0.2 -0.1 -0.4 -0.1
soil soil sample 4; outgrowth in LB -0.0 -0.1 +0.3 +0.0 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.3 -0.3 -0.2 +0.1
rhizosphere rhizosphere sample 5; outgrowth in LB -0.2 +0.1 +0.3 -0.0 -0.2
rhizosphere rhizosphere sample 7; outgrowth in LB -0.2 -0.2 +0.2 +0.1 +0.1
carbon source D-Glucose (C) -0.2 +0.2 -0.1 -0.1 +0.4
carbon source Sebacic (C) +0.3 -0.1 -0.1 +0.2 -0.2
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.4 +0.0 +0.1 -0.2 -0.1
carbon source Octanoic (C) -0.0 +0.3 -0.1 +0.3 -0.2
carbon source L-Glutamic (C) -0.2 +0.3 -0.1 +0.0 +0.2
soil soil EcoFAB sample 2; outgrowth in LB -0.2 -0.1 +0.4 +0.1 +0.2
rhizosphere rhizosphere sample 9; outgrowth in LB +0.3 -0.2 +0.3 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.5 +0.3 +0.1 +0.6
rhizosphere rhizosphere sample 8; outgrowth in LB +0.5 -0.2 -0.1 +0.2 +0.2
carbon source Octanoic (C) +0.1 -0.2 -0.0 +0.4 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.1 +0.0 +0.2 +0.2
soil soil EcoFAB sample 1; outgrowth in LB -0.4 +0.3 +0.3 +0.4 +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 +0.1 +0.3 +0.5 +0.3
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