Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS22655 and ABZR87_RS22660 are separated by 1 nucleotidesABZR87_RS22660 and ABZR87_RS22665 are separated by 50 nucleotidesABZR87_RS22665 and ABZR87_RS22670 are separated by 73 nucleotidesABZR87_RS22670 and ABZR87_RS22675 are separated by 587 nucleotides ABZR87_RS22655: ABZR87_RS22655 - poly-beta-1,6-N-acetyl-D-glucosamine synthase, at 1,439,006 to 1,440,292 _RS22655 ABZR87_RS22660: ABZR87_RS22660 - poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, at 1,440,294 to 1,442,444 _RS22660 ABZR87_RS22665: ABZR87_RS22665 - poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA, at 1,442,495 to 1,444,960 _RS22665 ABZR87_RS22670: ABZR87_RS22670 - response regulator transcription factor, at 1,445,034 to 1,446,044 _RS22670 ABZR87_RS22675: ABZR87_RS22675 - hypothetical protein, at 1,446,632 to 1,446,874 _RS22675
Group Condition ABZR87_RS22655 ABZR87_RS22660 ABZR87_RS22665 ABZR87_RS22670 ABZR87_RS22675
soil soil EcoFAB sample 1; outgrowth in LB -0.3 -0.1 -0.3 -0.4 -1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.4 +0.0 -1.0 -1.2
carbon source Octanoic (C) -0.0 -0.4 -0.4 +0.0 -1.1
carbon source Protocatechuic Acid (C) -0.0 -0.2 -0.4 -0.4 -0.7
carbon source Lauric (C) -0.1 -0.3 -0.5 -0.4 +0.0
carbon source Octanoic (C) +0.0 -0.0 -0.4 -0.4 -0.5
carbon source Dodecandioic (C) -0.1 -0.3 -0.3 -0.2 -0.3
carbon source Dodecandioic (C) -0.0 -0.3 -0.4 -0.1 -0.4
carbon source Heptanoic (C) +0.1 -0.1 -0.3 -0.4 -0.4
soil soil EcoFAB sample 2; outgrowth in LB -0.1 -0.1 -0.2 +0.0 -0.6
carbon source Heptanoic (C) +0.0 -0.1 -0.4 +0.1 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.2 -0.0 -0.7 +0.1
carbon source butyrate (C) -0.2 +0.1 -0.3 -0.1 -0.4
carbon source Sebacic (C) +0.2 -0.2 -0.2 -0.2 -0.5
nitrogen source nitrogen source nitrite 0.5mM +0.3 +0.0 +0.0 -0.5 -0.6
carbon source Sebacic (C) -0.3 -0.1 -0.3 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.2 +0.1 -0.4 -0.4
carbon source Suberic (C) +0.0 +0.2 -0.1 -0.3 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.1 -0.1 -0.6 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.2 +0.2 -0.1 -0.6
rhizosphere rhizosphere sample 3; outgrowth in LB +0.0 -0.0 -0.1 +0.4 -0.5
carbon source Azelaic (C) -0.0 +0.1 -0.1 +0.4 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.2 +0.1 +0.1 +0.3
rhizosphere rhizosphere sample 9; outgrowth in LB -0.0 -0.1 -0.1 -0.2 +0.6
phage Ra1_0.1 -0.2 +0.1 -0.2 -0.1 +0.9
carbon source Pimelic (C) +0.3 +0.2 -0.1 -0.1 +0.3
micoeukaryotes C.elegans, mixed culture-1 -0.0 -0.1 -0.1 +0.3 +0.6
phage Ra3_1 +0.3 -0.1 -0.1 +0.1 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.2 +0.2 -0.4 +1.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.3 -0.0 +0.2 +0.4 +0.8
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