Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS22345 and ABZR87_RS22350 overlap by 1 nucleotidesABZR87_RS22350 and ABZR87_RS22355 are separated by 144 nucleotidesABZR87_RS22355 and ABZR87_RS22360 are separated by 19 nucleotidesABZR87_RS22360 and ABZR87_RS22365 are separated by 629 nucleotides ABZR87_RS22345: ABZR87_RS22345 - nucleotidyltransferase family protein, at 1,372,160 to 1,372,756 _RS22345 ABZR87_RS22350: ABZR87_RS22350 - organic hydroperoxide resistance protein, at 1,372,756 to 1,373,190 _RS22350 ABZR87_RS22355: ABZR87_RS22355 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 1,373,335 to 1,375,578 _RS22355 ABZR87_RS22360: ABZR87_RS22360 - (2Fe-2S)-binding protein, at 1,375,598 to 1,376,056 _RS22360 ABZR87_RS22365: ABZR87_RS22365 - 2-isopropylmalate synthase, at 1,376,686 to 1,378,398 _RS22365
Group Condition ABZR87_RS22345 ABZR87_RS22350 ABZR87_RS22355 ABZR87_RS22360 ABZR87_RS22365
carbon source Azelaic (C) N.D. -1.4 -0.0 -0.3 +0.0
carbon source Valeric (C) N.D. -0.4 -0.0 -0.6 -0.1
root root EcoFAB sample 2; outgrowth in LB N.D. -0.4 -0.0 -0.6 -0.0
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.4 -0.1 -0.5 -0.0
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.5 -0.3 -0.2 +0.0
root root sample 6; outgrowth in LB N.D. -0.3 +0.1 -0.7 +0.0
carbon source 4-Hydroxybenzoic Acid (C) N.D. -1.1 -0.1 +0.4 -0.1
nitrogen source nitrogen source nitrite 0.5mM N.D. -0.7 +0.1 -0.2 +0.0
soil soil sample 9; outgrowth in LB N.D. -0.1 -0.2 -0.5 +0.2
carbon source Protocatechuic Acid (C) N.D. -0.1 +0.3 -0.5 -0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. +0.2 -0.2 -0.2 -0.3
carbon source Suberic (C) N.D. +0.4 +0.0 -0.8 -0.1
nitrogen source nitrogen source nitrate 5mM N.D. -0.5 +0.1 +0.1 -0.1
carbon source Trans-2-methyl-2-butenoic (C) N.D. +0.3 +0.0 -0.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 -0.0 +0.4 +0.3
root root sample 5; outgrowth in LB N.D. +0.3 +0.1 -0.3 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. +0.4 -0.2 -0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 -0.2 +0.5 -0.1
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -0.2 -0.1 +0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.5 -0.3 +0.8 +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 -0.0 +0.8 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. +0.2 -0.1 +0.5 +0.1
carbon source Pimelic (C) N.D. +0.4 +0.2 +0.2 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +1.1 +0.0 -0.1 -0.3
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. +0.5 -0.1 +0.4 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +1.0 -0.2 +0.0 -0.1
nitrogen source nitrogen source nitrate 20mM N.D. +0.6 +0.0 +0.4 -0.1
root root sample 4; outgrowth in LB N.D. +0.3 +0.1 +0.7 +0.1
carbon source Octanoic (C) N.D. +1.0 +0.2 +0.3 -0.3
carbon source Octanoic (C) N.D. +0.6 +0.4 +0.9 -0.0
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