Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS22285 and ABZR87_RS22290 are separated by 212 nucleotidesABZR87_RS22290 and ABZR87_RS22295 are separated by 428 nucleotidesABZR87_RS22295 and ABZR87_RS22300 are separated by 122 nucleotidesABZR87_RS22300 and ABZR87_RS22305 are separated by 127 nucleotides ABZR87_RS22285: ABZR87_RS22285 - flagellar basal body rod protein FlgC, at 1,360,051 to 1,360,458 _RS22285 ABZR87_RS22290: ABZR87_RS22290 - flagellar basal body rod protein FlgB, at 1,360,671 to 1,361,126 _RS22290 ABZR87_RS22295: ABZR87_RS22295 - flagellar basal body P-ring formation chaperone FlgA, at 1,361,555 to 1,362,433 _RS22295 ABZR87_RS22300: ABZR87_RS22300 - flagellar biosynthesis anti-sigma factor FlgM, at 1,362,556 to 1,362,876 _RS22300 ABZR87_RS22305: ABZR87_RS22305 - flagella synthesis protein FlgN, at 1,363,004 to 1,363,465 _RS22305
Group Condition ABZR87_RS22285 ABZR87_RS22290 ABZR87_RS22295 ABZR87_RS22300 ABZR87_RS22305
phage Ra3_1 -2.8 -2.3 -2.3 -2.1 -1.7
phage Ra1_0.1 -1.6 -2.6 -2.2 -1.2 -1.9
phage Ra3_0.1 -1.2 -1.5 -1.3 -3.0 -1.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +2.0 +1.7 +1.5 -1.8 +0.5
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +2.6 +2.2 +2.1 -1.8 +1.3
soil soil sample 1; outgrowth in LB +2.1 +1.9 +2.0 +0.4 +1.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.1 +1.9 +1.6 -0.9 +3.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +1.3 +1.6 +2.1 +3.4
root root EcoFAB sample 2; outgrowth in LB +2.8 +2.5 +2.2 -0.2 +1.4
root root sample 5; outgrowth in LB +2.8 +2.6 +2.4 -0.1 +1.7
soil soil sample 9; outgrowth in LB +2.9 +2.4 +2.4 +0.6 +1.5
rhizosphere rhizosphere sample 2; outgrowth in LB +3.2 +2.8 +2.7 -0.6 +1.7
rhizosphere rhizosphere sample 3; outgrowth in LB +3.1 +3.1 +2.7 +0.1 +1.7
rhizosphere rhizosphere sample 5; outgrowth in LB +3.5 +2.9 +2.8 +0.1 +2.1
rhizosphere rhizosphere sample 8; outgrowth in LB +3.3 +3.3 +3.2 +0.1 +1.9
rhizosphere rhizosphere sample 6; outgrowth in LB +3.6 +3.3 +3.2 +0.3 +1.8
rhizosphere rhizosphere sample 4; outgrowth in LB +3.5 +2.6 +2.8 +1.3 +2.2
soil soil sample 4; outgrowth in LB +3.4 +3.3 +3.3 +0.8 +1.7
root root sample 6; outgrowth in LB +3.3 +2.9 +3.0 +1.6 +1.8
rhizosphere rhizosphere sample 7; outgrowth in LB +4.0 +3.6 +3.4 -0.2 +1.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.6 +2.2 +2.7 +1.9 +3.5
rhizosphere rhizosphere sample 1; outgrowth in LB +4.0 +3.8 +3.6 +0.2 +1.8
root root sample 4; outgrowth in LB +3.4 +3.3 +3.0 +1.9 +2.1
rhizosphere rhizosphere sample 9; outgrowth in LB +3.7 +3.6 +3.5 +0.8 +2.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.2 +2.2 +2.1 +4.9 +3.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +3.5 +2.0 +1.9 +4.5 +3.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.0 +2.5 +2.4 +4.6 +4.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +3.1 +2.9 +2.7 +4.2 +3.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +3.0 +2.6 +3.1 +3.2 +5.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +5.3 +4.0 +2.7 +1.3 +4.5
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ABZR87_RS22285
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ABZR87_RS22290
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ABZR87_RS22300
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ABZR87_RS22305
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