Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS22175 and ABZR87_RS22180 are separated by 406 nucleotidesABZR87_RS22180 and ABZR87_RS22185 are separated by 5 nucleotidesABZR87_RS22185 and ABZR87_RS22190 are separated by 513 nucleotidesABZR87_RS22190 and ABZR87_RS22195 are separated by 1 nucleotides ABZR87_RS22175: ABZR87_RS22175 - flagellin, at 1,339,704 to 1,340,525 _RS22175 ABZR87_RS22180: ABZR87_RS22180 - response regulator transcription factor, at 1,340,932 to 1,341,567 _RS22180 ABZR87_RS22185: ABZR87_RS22185 - EAL domain-containing protein, at 1,341,573 to 1,343,309 _RS22185 ABZR87_RS22190: ABZR87_RS22190 - flagellar basal body-associated protein FliL, at 1,343,823 to 1,344,320 _RS22190 ABZR87_RS22195: ABZR87_RS22195 - flagellar motor switch protein FliM, at 1,344,322 to 1,345,332 _RS22195
Group Condition ABZR87_RS22175 ABZR87_RS22180 ABZR87_RS22185 ABZR87_RS22190 ABZR87_RS22195
phage Ra1_0.1 -1.1 +0.2 -0.1 -2.4 -2.0
phage Ra3_1 -0.7 +0.4 -0.2 -2.1 -2.4
root root EcoFAB sample 1; outgrowth in LB +1.4 -0.2 +0.3 +1.7 +1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.6 -0.4 -0.1 +1.3 +2.0
soil soil sample 7; outgrowth in LB +1.7 +0.1 +0.0 +1.8 +1.8
soil soil sample 1; outgrowth in LB +1.7 +0.2 +0.1 +1.5 +2.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +1.9 -0.6 +0.3 +1.9 +2.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.5 -0.6 +0.0 +1.8 +2.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.9 +0.2 +0.1 +1.7 +2.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.2 -0.5 +0.2 +1.9 +2.1
soil soil sample 9; outgrowth in LB +2.0 -0.2 -0.0 +2.1 +2.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +3.8 -0.4 -0.2 +0.8 +2.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.0 +0.9 -0.0 +1.7 +1.8
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.0 +0.6 +0.0 +2.3 +1.9
root root sample 5; outgrowth in LB +1.9 +0.0 +0.1 +2.5 +2.5
root root EcoFAB sample 2; outgrowth in LB +2.2 -0.2 +0.2 +2.3 +2.6
rhizosphere rhizosphere sample 5; outgrowth in LB +2.3 -0.1 -0.1 +2.5 +3.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +3.1 +0.3 +0.0 +1.7 +2.6
rhizosphere rhizosphere sample 2; outgrowth in LB +2.2 +0.3 -0.4 +2.7 +2.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.0 +1.2 +0.2 +2.5 +1.9
rhizosphere rhizosphere sample 3; outgrowth in LB +2.4 +0.2 -0.1 +2.7 +2.9
rhizosphere rhizosphere sample 4; outgrowth in LB +2.4 +0.9 -0.1 +2.7 +3.1
soil soil sample 4; outgrowth in LB +3.2 +0.1 -0.1 +2.8 +3.2
rhizosphere rhizosphere sample 8; outgrowth in LB +2.8 -0.4 +0.1 +3.1 +3.7
root root sample 4; outgrowth in LB +3.0 -0.0 +0.5 +2.8 +3.2
rhizosphere rhizosphere sample 6; outgrowth in LB +2.8 +0.5 +0.1 +2.9 +3.4
rhizosphere rhizosphere sample 1; outgrowth in LB +3.0 +0.2 -0.2 +3.5 +3.9
rhizosphere rhizosphere sample 9; outgrowth in LB +3.2 +0.7 +0.1 +3.0 +3.6
root root sample 6; outgrowth in LB +2.8 +1.2 +0.3 +3.2 +3.3
rhizosphere rhizosphere sample 7; outgrowth in LB +3.5 +0.2 -0.1 +3.5 +3.8
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