Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS22120 and ABZR87_RS22125 overlap by 4 nucleotidesABZR87_RS22125 and ABZR87_RS22130 overlap by 4 nucleotidesABZR87_RS22130 and ABZR87_RS22135 overlap by 4 nucleotidesABZR87_RS22135 and ABZR87_RS22140 are separated by 18 nucleotides ABZR87_RS22120: ABZR87_RS22120 - class I SAM-dependent methyltransferase, at 1,330,348 to 1,331,535 _RS22120 ABZR87_RS22125: ABZR87_RS22125 - GNAT family protein, at 1,331,532 to 1,332,047 _RS22125 ABZR87_RS22130: ABZR87_RS22130 - WbqC family protein, at 1,332,044 to 1,332,757 _RS22130 ABZR87_RS22135: ABZR87_RS22135 - glycosyltransferase family A protein, at 1,332,754 to 1,334,028 _RS22135 ABZR87_RS22140: ABZR87_RS22140 - flagellar hook-basal body complex protein FliE, at 1,334,047 to 1,334,373 _RS22140
Group Condition ABZR87_RS22120 ABZR87_RS22125 ABZR87_RS22130 ABZR87_RS22135 ABZR87_RS22140
root root sample 6; outgrowth in LB -0.2 -1.2 -1.1 -0.6 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB -0.6 -1.1 -1.0 -0.1 N.D.
phage Ra1_0.1 -0.6 -0.4 -0.7 -0.6 N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB -0.2 -1.0 -0.5 -0.2 N.D.
phage Ra3_1 -0.5 +0.1 -0.8 -0.6 N.D.
rhizosphere rhizosphere sample 6; outgrowth in LB -0.3 -1.0 -0.2 -0.1 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.3 -0.4 -0.2 -0.3 N.D.
carbon source Octanoic (C) +0.2 -0.9 -0.2 -0.1 N.D.
root root sample 5; outgrowth in LB -0.3 +0.2 -0.8 -0.2 N.D.
root root sample 4; outgrowth in LB -0.5 +0.1 -0.2 -0.2 N.D.
phage Ra1_0.01 -0.0 +0.4 -0.5 -0.3 N.D.
soil soil EcoFAB sample 1; outgrowth in LB -0.6 -0.1 +0.3 +0.0 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB -0.6 -0.1 +0.3 +0.1 N.D.
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.1 +0.3 +0.5 -0.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.6 -0.2 +0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 -0.2 +0.3 +0.0 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.1 +0.6 -0.1 +0.3 N.D.
carbon source Protocatechuic Acid (C) +0.3 +0.6 -0.1 +0.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.4 -0.0 +0.3 N.D.
soil soil sample 9; outgrowth in LB +0.0 +0.5 +0.3 +0.1 N.D.
carbon source Azelaic (C) -0.1 +0.6 +0.2 +0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.9 -0.0 +0.2 N.D.
nitrogen source nitrogen source nitrite 1mM +0.5 +0.3 +0.1 +0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +0.6 +0.2 +0.1 N.D.
root root EcoFAB sample 2; outgrowth in LB +0.3 +0.5 +0.4 +0.3 N.D.
soil soil EcoFAB sample 2; outgrowth in LB -0.1 +0.7 +0.7 +0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.9 +0.6 +0.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.3 +0.9 +0.5 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.3 +0.9 +0.7 +0.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.1 +1.1 +0.9 +0.5 N.D.
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