Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABZR87_RS22090	ABZR87_RS22095	ABZR87_RS22100	ABZR87_RS22105	ABZR87_RS22110
phage	Ra3_1	-1.2	-0.6	-0.4	-0.9	-0.6
root	root sample 5; outgrowth in LB	-0.9	-0.7	-0.8	-0.3	-0.7
phage	Ra1_0.1	-1.0	-0.5	-0.6	-1.2	-0.2
rhizosphere	rhizosphere sample 7; outgrowth in LB	-0.5	-0.3	-0.3	-0.8	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.0	-0.1	-0.2	-1.1	-0.2
no plant control	Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	-0.2	+0.0	-0.2	-1.3	+0.1
phage	Ra3_0.1	-0.5	-0.2	-0.3	-0.3	-0.2
rhizosphere	rhizosphere sample 5; outgrowth in LB	-0.4	-0.2	+0.0	-0.5	-0.3
micoeukaryotes	Dictyostellum sp.mixed culture-1	-0.3	-0.2	-0.3	-0.5	+0.0
micoeukaryotes	Acanthamoeba sp., muxed culture-1	-0.2	-0.1	-0.2	-0.7	+0.0
carbon source	Octanoic (C)	-0.5	-0.5	+0.4	-0.2	-0.0
no_plant_soil	no_plant_soil sample 1; outgrowth in LB	-0.3	-0.1	-0.5	+0.2	-0.2
nitrogen source	nitrogen source nitrate 20mM	-0.1	+0.1	-0.6	+0.4	-0.2
carbon source	Sebacic (C)	-0.4	-0.2	-0.3	+0.5	+0.2
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	-0.4	+0.3	+0.4	-0.3	-0.0
carbon source	Azelaic (C)	+0.3	-0.1	+0.2	-0.4	+0.3
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	-0.3	+0.4	+0.2	-0.7	+0.5
carbon source	butyrate (C)	-0.2	-0.2	+0.1	+0.6	-0.1
carbon source	4-Hydroxybenzoic Acid (C)	-0.2	-0.0	+0.6	-0.4	+0.5
soil	soil EcoFAB sample 1; outgrowth in LB	+0.7	-0.2	+0.1	-0.5	+0.4
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	+0.2	+0.5	-0.4	+0.4	+0.1
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	+0.2	+0.3	+0.3	-0.3	+0.4
root	root EcoFAB sample 1; outgrowth in LB	+0.5	+0.4	+0.2	-0.5	+0.3
nitrogen source	nitrogen source nitrite 0.5mM	+0.5	+0.2	-0.2	+0.6	+0.1
soil	soil EcoFAB sample 2; outgrowth in LB	+0.3	+0.5	+0.1	-0.1	+0.4
no_plant_rhizosphere	no_plant_rhizosphere sample 1; outgrowth in LB	+0.1	+0.4	+0.2	+0.2	+0.4
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	+0.1	+0.2	+0.3	+0.5	+0.3
in planta	Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)	+0.0	+0.3	+0.3	+0.7	+0.3
root	root EcoFAB sample 2; outgrowth in LB	+0.3	+0.5	+0.2	+0.8	+0.1
rhizosphere	rhizosphere EcoFAB sample 1; outgrowth in LB	+0.9	+0.3	+0.2	+0.8	+0.1