Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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Top 30 experiments (either direction), sorted by average fitness

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500 ntABZR87_RS22030 and ABZR87_RS22035 are separated by 122 nucleotidesABZR87_RS22035 and ABZR87_RS22040 are separated by 181 nucleotidesABZR87_RS22040 and ABZR87_RS22045 are separated by 297 nucleotidesABZR87_RS22045 and ABZR87_RS22050 are separated by 155 nucleotides ABZR87_RS22030: ABZR87_RS22030 - hypothetical protein, at 1,312,719 to 1,313,162 _RS22030 ABZR87_RS22035: ABZR87_RS22035 - hypothetical protein, at 1,313,285 to 1,313,581 _RS22035 ABZR87_RS22040: ABZR87_RS22040 - S24 family peptidase, at 1,313,763 to 1,314,548 _RS22040 ABZR87_RS22045: ABZR87_RS22045 - GNAT family N-acetyltransferase, at 1,314,846 to 1,315,394 _RS22045 ABZR87_RS22050: ABZR87_RS22050 - DedA family protein/thiosulfate sulfurtransferase GlpE, at 1,315,550 to 1,316,527 _RS22050
Group Condition ABZR87_RS22030 ABZR87_RS22035 ABZR87_RS22040 ABZR87_RS22045 ABZR87_RS22050
root root sample 5; outgrowth in LB -1.1 -3.9 N.D. +0.3 +0.0
rhizosphere rhizosphere sample 3; outgrowth in LB -0.4 -2.3 N.D. -0.1 +0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.2 -2.3 N.D. -0.1 -0.1
root root sample 6; outgrowth in LB -0.5 -1.6 N.D. -0.4 +0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.7 -1.1 N.D. -0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -1.5 N.D. +0.3 -0.2
rhizosphere rhizosphere sample 6; outgrowth in LB -0.3 -1.4 N.D. -0.2 +0.1
rhizosphere rhizosphere sample 9; outgrowth in LB -0.5 -1.2 N.D. -0.0 -0.0
soil soil EcoFAB sample 2; outgrowth in LB -0.7 -0.8 N.D. -0.1 -0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.4 -1.2 N.D. +0.0 -0.1
root root EcoFAB sample 2; outgrowth in LB -0.1 -1.5 N.D. -0.1 +0.1
soil soil sample 3; outgrowth in LB -0.2 -1.3 N.D. -0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -1.1 N.D. -0.1 +0.1
soil soil sample 2; outgrowth in LB -0.2 -1.1 N.D. -0.1 -0.0
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 -1.3 N.D. -0.0 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 -0.9 N.D. +0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -1.2 N.D. -0.0 +0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.3 -0.8 N.D. -0.1 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.0 -1.6 N.D. +0.0 +0.2
soil soil sample 8; outgrowth in LB -0.4 -0.9 N.D. +0.0 +0.1
carbon source Octanoic (C) +1.0 -2.1 N.D. +0.0 -0.1
soil soil sample 1; outgrowth in LB -0.1 -1.2 N.D. +0.1 +0.1
root root EcoFAB sample 1; outgrowth in LB -0.1 -1.3 N.D. +0.1 +0.1
no_plant_soil no_plant_soil sample 2; outgrowth in LB +0.2 -1.3 N.D. -0.0 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.9 N.D. +0.2 +0.1
root root sample 4; outgrowth in LB +0.3 -1.3 N.D. -0.1 +0.1
soil soil sample 5; outgrowth in LB +0.2 -1.0 N.D. -0.0 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -1.0 N.D. -0.1 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.3 -0.9 N.D. -0.0 -0.1
carbon source Sebacic (C) +0.3 +0.5 N.D. +0.1 -0.4
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