Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS21855 and ABZR87_RS21860 are separated by 28 nucleotidesABZR87_RS21860 and ABZR87_RS21865 are separated by 205 nucleotidesABZR87_RS21865 and ABZR87_RS21870 are separated by 4 nucleotidesABZR87_RS21870 and ABZR87_RS21875 are separated by 80 nucleotides ABZR87_RS21855: ABZR87_RS21855 - hypothetical protein, at 1,283,051 to 1,283,359 _RS21855 ABZR87_RS21860: ABZR87_RS21860 - beta-ketoacyl-ACP synthase III, at 1,283,388 to 1,284,509 _RS21860 ABZR87_RS21865: ABZR87_RS21865 - copper homeostasis periplasmic binding protein CopC, at 1,284,715 to 1,285,089 _RS21865 ABZR87_RS21870: ABZR87_RS21870 - copper homeostasis membrane protein CopD, at 1,285,094 to 1,286,023 _RS21870 ABZR87_RS21875: ABZR87_RS21875 - M20/M25/M40 family metallo-hydrolase, at 1,286,104 to 1,287,327 _RS21875
Group Condition ABZR87_RS21855 ABZR87_RS21860 ABZR87_RS21865 ABZR87_RS21870 ABZR87_RS21875
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 -1.1 N.D. -0.2 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -1.2 N.D. +0.5 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -1.0 N.D. -0.1 +0.1
root root EcoFAB sample 2; outgrowth in LB -0.3 -0.7 N.D. +0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.5 N.D. +0.8 -0.5
carbon source Suberic (C) -0.1 -0.6 N.D. -0.2 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.1 -0.3 N.D. -0.6 +0.1
rhizosphere rhizosphere sample 9; outgrowth in LB -0.5 -0.1 N.D. +0.2 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.4 N.D. -0.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 +0.2 N.D. +0.2 -0.0
root root sample 5; outgrowth in LB +0.6 -0.2 N.D. -0.6 -0.0
root root sample 6; outgrowth in LB +0.5 -0.0 N.D. -0.2 -0.5
soil soil EcoFAB sample 1; outgrowth in LB +0.6 -1.8 N.D. +0.5 +0.6
root root EcoFAB sample 1; outgrowth in LB +0.1 -0.5 N.D. +0.2 +0.1
carbon source Protocatechuic Acid (C) -0.2 +0.5 N.D. -0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.1 N.D. +0.5 +0.1
carbon source Sebacic (C) +0.4 +0.3 N.D. -0.1 -0.2
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 +0.4 N.D. +0.2 -0.3
carbon source Trans-2-methyl-2-butenoic (C) +0.4 +0.4 N.D. -0.1 -0.2
carbon source Octanoic (C) +0.1 +0.6 N.D. -0.3 +0.1
nitrogen source nitrogen source nitrite 5mM +0.4 +0.4 N.D. -0.2 +0.1
carbon source propionate (C) +0.4 +0.3 N.D. -0.2 +0.1
rhizosphere rhizosphere sample 7; outgrowth in LB -0.3 +0.3 N.D. +0.4 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.8 N.D. +0.0 +0.2
carbon source Lauric (C) +0.1 +0.7 N.D. -0.1 +0.2
rhizosphere rhizosphere sample 3; outgrowth in LB +0.3 -0.1 N.D. +0.4 +0.3
root root sample 4; outgrowth in LB +0.8 -0.3 N.D. +0.4 +0.1
carbon source butyrate (C) +0.4 +0.6 N.D. +0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 +0.2 N.D. +0.7 -0.1
carbon source Octanoic (C) +1.0 +0.8 N.D. +0.3 +0.1
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