Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS21730 and ABZR87_RS21735 are separated by 9 nucleotidesABZR87_RS21735 and ABZR87_RS21740 are separated by 252 nucleotidesABZR87_RS21740 and ABZR87_RS21745 are separated by 10 nucleotidesABZR87_RS21745 and ABZR87_RS21750 are separated by 205 nucleotides ABZR87_RS21730: ABZR87_RS21730 - heavy metal sensor histidine kinase, at 1,259,784 to 1,261,226 _RS21730 ABZR87_RS21735: ABZR87_RS21735 - DUF2917 domain-containing protein, at 1,261,236 to 1,261,598 _RS21735 ABZR87_RS21740: ABZR87_RS21740 - TauD/TfdA family dioxygenase, at 1,261,851 to 1,262,807 _RS21740 ABZR87_RS21745: ABZR87_RS21745 - M20 family peptidase, at 1,262,818 to 1,264,344 _RS21745 ABZR87_RS21750: ABZR87_RS21750 - MetQ/NlpA family ABC transporter substrate-binding protein, at 1,264,550 to 1,265,335 _RS21750
Group Condition ABZR87_RS21730 ABZR87_RS21735 ABZR87_RS21740 ABZR87_RS21745 ABZR87_RS21750
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -1.9 -0.6 -0.8 +0.4
root root EcoFAB sample 1; outgrowth in LB -0.4 -1.6 -0.4 +0.0 -0.4
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 -2.3 -0.1 -0.1 +0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.2 +0.9 -0.2 -0.4 -2.2
rhizosphere rhizosphere sample 7; outgrowth in LB -0.5 -1.5 +0.2 -0.2 +0.1
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 -0.5 -0.3 -0.2 -0.6
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.0 -0.6 -0.0 -0.5 -0.6
soil soil EcoFAB sample 2; outgrowth in LB +0.3 -0.1 -0.1 -0.6 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.7 -0.4 -0.4 -0.1
carbon source succinate (C) +0.3 -1.3 -0.2 -0.2 +0.1
carbon source Octanoic (C) +0.8 -1.5 -0.3 +0.4 -0.7
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -0.2 -0.3 -0.8 -0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.4 -0.3 -0.7 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.4 +0.1 -1.1 +0.1
carbon source Dodecandioic (C) -0.3 -0.9 +0.2 +0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.6 -0.3 -0.7 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.1 -0.3 -0.7 +0.1
root root sample 4; outgrowth in LB +0.5 -1.2 -0.3 +0.0 +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 -0.9 -0.0 +0.2 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.5 -0.2 -0.4 +0.9
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 +0.8 -0.3 -0.4 -0.2
root root EcoFAB sample 2; outgrowth in LB +0.8 -0.3 +0.4 -0.5 -0.0
carbon source butyrate (C) -0.0 +1.1 +0.1 -0.5 -0.0
carbon source Suberic (C) +0.2 +0.8 +0.1 -0.3 -0.1
nitrogen source nitrogen source nitrite 0.5mM -0.5 +0.2 +0.3 +0.2 +0.5
nitrogen source nitrogen source nitrate 5mM -0.3 +0.4 -0.2 +0.3 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +0.3 -0.2 +0.5 -0.5
carbon source Lauric (C) +0.4 +0.9 +0.0 -0.3 -0.1
nitrogen source nitrogen source nitrate 5mM -0.1 +1.0 -0.2 +0.4 +0.1
root root sample 5; outgrowth in LB +0.4 +2.2 -0.1 -0.1 -0.7
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