Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS21705 and ABZR87_RS21710 are separated by 11 nucleotidesABZR87_RS21710 and ABZR87_RS21715 are separated by 24 nucleotidesABZR87_RS21715 and ABZR87_RS21720 are separated by 101 nucleotidesABZR87_RS21720 and ABZR87_RS21725 are separated by 196 nucleotides ABZR87_RS21705: ABZR87_RS21705 - CusA/CzcA family heavy metal efflux RND transporter, at 1,252,892 to 1,256,062 _RS21705 ABZR87_RS21710: ABZR87_RS21710 - efflux RND transporter periplasmic adaptor subunit, at 1,256,074 to 1,257,264 _RS21710 ABZR87_RS21715: ABZR87_RS21715 - TolC family protein, at 1,257,289 to 1,258,458 _RS21715 ABZR87_RS21720: ABZR87_RS21720 - hypothetical protein, at 1,258,560 to 1,258,913 _RS21720 ABZR87_RS21725: ABZR87_RS21725 - heavy metal response regulator transcription factor, at 1,259,110 to 1,259,784 _RS21725
Group Condition ABZR87_RS21705 ABZR87_RS21710 ABZR87_RS21715 ABZR87_RS21720 ABZR87_RS21725
root root EcoFAB sample 2; outgrowth in LB -0.3 -0.7 N.D. +0.3 -0.3
micoeukaryotes C.elegans, mixed culture-1 -0.1 -0.5 N.D. -0.0 -0.4
carbon source Octanoic (C) -0.2 -1.0 N.D. -0.2 +0.4
carbon source Azelaic (C) -0.0 -0.5 N.D. +0.2 -0.4
rhizosphere rhizosphere sample 9; outgrowth in LB -0.4 -0.1 N.D. +0.2 -0.2
carbon source Trans-2-methyl-2-butenoic (C) -0.0 -0.4 N.D. +0.2 -0.3
carbon source Protocatechuic Acid (C) -0.2 +0.4 N.D. +0.0 -0.5
nitrogen source nitrogen source nitrite 0.5mM +0.0 -0.8 N.D. +0.2 +0.2
carbon source butyrate (C) -0.2 -0.2 N.D. +0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.2 N.D. -0.2 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.7 N.D. -0.4 -0.3
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.1 +0.3 N.D. +0.4 -0.8
carbon source Sebacic (C) +0.0 -0.8 N.D. +0.6 +0.1
phage Ra1_0.1 -0.1 +0.5 N.D. -0.3 +0.3
rhizosphere rhizosphere sample 5; outgrowth in LB -0.1 +0.7 N.D. -0.5 +0.2
phage Ra1_0.01 +0.1 +0.3 N.D. -0.4 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.5 N.D. +0.5 +0.0
soil soil EcoFAB sample 2; outgrowth in LB -0.2 -0.1 N.D. +0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.4 N.D. -0.2 +0.5
root root sample 5; outgrowth in LB -0.1 +1.3 N.D. -0.5 -0.2
soil soil sample 4; outgrowth in LB +0.1 +0.3 N.D. +0.4 -0.3
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.2 +0.1 N.D. +0.3 +0.3
rhizosphere rhizosphere sample 4; outgrowth in LB -0.1 +0.8 N.D. +0.4 -0.4
rhizosphere rhizosphere sample 6; outgrowth in LB +0.1 +0.6 N.D. +0.3 -0.2
phage Ra3_1 +0.2 +0.6 N.D. -0.0 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.5 N.D. +0.6 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.3 +0.5 N.D. +0.5 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.3 +0.2 N.D. +0.8 +0.5
root root sample 4; outgrowth in LB +0.1 +0.6 N.D. +0.5 +0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.0 +0.3 N.D. +0.8 +0.7
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