Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS21580 and ABZR87_RS21585 are separated by 332 nucleotidesABZR87_RS21585 and ABZR87_RS21590 are separated by 20 nucleotidesABZR87_RS21590 and ABZR87_RS21595 are separated by 74 nucleotidesABZR87_RS21595 and ABZR87_RS21600 are separated by 97 nucleotides ABZR87_RS21580: ABZR87_RS21580 - HAD-IA family hydrolase, at 1,224,664 to 1,225,362 _RS21580 ABZR87_RS21585: ABZR87_RS21585 - multidrug efflux SMR transporter, at 1,225,695 to 1,226,024 _RS21585 ABZR87_RS21590: ABZR87_RS21590 - NAD(P)H-dependent oxidoreductase, at 1,226,045 to 1,226,689 _RS21590 ABZR87_RS21595: ABZR87_RS21595 - Rrf2 family transcriptional regulator, at 1,226,764 to 1,227,201 _RS21595 ABZR87_RS21600: ABZR87_RS21600 - NAD(P)-dependent oxidoreductase, at 1,227,299 to 1,227,910 _RS21600
Group Condition ABZR87_RS21580 ABZR87_RS21585 ABZR87_RS21590 ABZR87_RS21595 ABZR87_RS21600
root root EcoFAB sample 1; outgrowth in LB -0.4 -1.0 -0.1 N.D. -0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.4 -1.2 -0.4 N.D. +0.0
carbon source 4-Hydroxybenzoic Acid (C) +0.3 -0.9 -0.7 N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.4 -0.6 N.D. -0.3
nitrogen source nitrogen source nitrite 1mM -0.4 -0.9 +0.1 N.D. -0.2
soil soil EcoFAB sample 1; outgrowth in LB -0.4 -0.8 -0.1 N.D. -0.0
carbon source Pimelic (C) +0.0 -0.8 -0.5 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -1.0 +0.1 N.D. -0.1
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.3 -0.8 -0.1 N.D. +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 -0.8 -0.4 N.D. -0.5
carbon source D-Galactose (C) -0.1 -0.7 -0.2 N.D. -0.2
rhizosphere rhizosphere sample 3; outgrowth in LB -0.5 -0.1 +0.4 N.D. -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.0 -0.7 -0.1 N.D. +0.3
phage Ra3_0.1 +0.2 -0.7 +0.3 N.D. -0.2
nitrogen source nitrogen source nitrate 5mM -0.3 -0.2 -0.3 N.D. +0.4
nitrogen source nitrogen source nitrite 5mM -0.2 -0.5 -0.0 N.D. +0.4
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.1 -0.4 -0.3 N.D. +0.5
soil soil EcoFAB sample 2; outgrowth in LB -0.4 -0.3 +0.3 N.D. +0.2
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.1 +0.6 -0.2 N.D. -0.5
carbon source butyrate (C) -0.1 -0.5 +0.3 N.D. +0.2
carbon source Disodium Glutarate (C) -0.0 -0.6 +0.1 N.D. +0.5
root root sample 5; outgrowth in LB +0.9 -1.2 +0.2 N.D. +0.1
rhizosphere rhizosphere sample 6; outgrowth in LB -0.4 +0.6 +0.1 N.D. -0.1
rhizosphere rhizosphere sample 5; outgrowth in LB -0.2 +0.5 +0.4 N.D. -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 +0.2 +0.6 N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.7 -0.1 N.D. +0.3
carbon source Suberic (C) -0.2 +0.5 +0.3 N.D. +0.4
carbon source D-Glucose (C) -0.2 +0.6 +0.3 N.D. +0.4
root root sample 4; outgrowth in LB +0.0 +0.8 +0.1 N.D. +0.4
root root EcoFAB sample 2; outgrowth in LB -0.0 +0.3 +0.8 N.D. +1.4
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