Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS21545 and ABZR87_RS21550 are separated by 28 nucleotidesABZR87_RS21550 and ABZR87_RS21555 are separated by 156 nucleotidesABZR87_RS21555 and ABZR87_RS21560 are separated by 91 nucleotidesABZR87_RS21560 and ABZR87_RS21565 are separated by 49 nucleotides ABZR87_RS21545: ABZR87_RS21545 - GNAT family N-acetyltransferase, at 1,217,329 to 1,218,216 _RS21545 ABZR87_RS21550: ABZR87_RS21550 - glyoxylate/hydroxypyruvate reductase A, at 1,218,245 to 1,219,177 _RS21550 ABZR87_RS21555: ABZR87_RS21555 - aspartate aminotransferase family protein, at 1,219,334 to 1,220,734 _RS21555 ABZR87_RS21560: ABZR87_RS21560 - Lrp/AsnC family transcriptional regulator, at 1,220,826 to 1,221,320 _RS21560 ABZR87_RS21565: ABZR87_RS21565 - cupin domain-containing protein, at 1,221,370 to 1,222,089 _RS21565
Group Condition ABZR87_RS21545 ABZR87_RS21550 ABZR87_RS21555 ABZR87_RS21560 ABZR87_RS21565
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -1.0 -0.9 -0.7 -0.7
carbon source Octanoic (C) N.D. -1.6 -0.4 -0.9 -0.1
root root sample 6; outgrowth in LB N.D. -0.1 -1.6 -1.1 -0.2
root root sample 5; outgrowth in LB N.D. -0.3 -1.0 -0.4 -0.4
root root sample 4; outgrowth in LB N.D. +0.5 -0.7 -0.2 -1.4
nitrogen source nitrogen source nitrate 20mM N.D. -0.7 -0.4 -0.2 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.6 +0.1 +0.3 -0.3
root root EcoFAB sample 2; outgrowth in LB N.D. -0.4 -0.6 -0.5 +0.2
soil soil sample 2; outgrowth in LB N.D. -0.6 +0.0 -0.4 -0.3
carbon source Octanoic (C) N.D. -1.1 -0.3 -0.0 +0.1
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. +0.4 -0.4 -0.8 -0.5
carbon source Azelaic (C) N.D. +0.1 -0.1 -0.8 -0.3
soil soil EcoFAB sample 1; outgrowth in LB N.D. -1.1 -0.3 -0.3 +0.5
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.3 +0.1 +0.5 -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. -0.8 -0.3 +0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.3 -0.6 -0.6 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.0 -0.7 +0.4 -0.4
nitrogen source nitrogen source nitrite 5mM N.D. -0.6 -0.3 +0.4 -0.2
micoeukaryotes Acanthamoeba sp., muxed culture-1 N.D. -0.8 +0.2 -0.0 +0.1
nitrogen source nitrogen source nitrite 0.5mM N.D. -0.6 -0.4 +0.6 -0.0
root root EcoFAB sample 1; outgrowth in LB N.D. -0.1 -0.4 -0.2 +0.5
nitrogen source nitrogen source nitrate 5mM N.D. -0.2 +0.2 +0.7 -0.7
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -0.6 +0.6 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +1.0 +0.1 -0.6 -0.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -0.3 +0.4 +0.4 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 +0.1 +0.9 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.5 +0.7 -0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.8 +0.1 +0.8 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -0.2 +1.7 +0.1 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.2 +1.8 +0.4 -0.0
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