Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS20845 and ABZR87_RS20850 are separated by 63 nucleotidesABZR87_RS20850 and ABZR87_RS20855 are separated by 315 nucleotidesABZR87_RS20855 and ABZR87_RS20860 are separated by 39 nucleotidesABZR87_RS20860 and ABZR87_RS20865 are separated by 104 nucleotides ABZR87_RS20845: ABZR87_RS20845 - MFS transporter, at 1,061,158 to 1,062,558 _RS20845 ABZR87_RS20850: ABZR87_RS20850 - homogentisate 1,2-dioxygenase, at 1,062,622 to 1,063,968 _RS20850 ABZR87_RS20855: ABZR87_RS20855 - fumarylacetoacetase, at 1,064,284 to 1,065,555 _RS20855 ABZR87_RS20860: ABZR87_RS20860 - FMN-binding negative transcriptional regulator, at 1,065,595 to 1,066,233 _RS20860 ABZR87_RS20865: ABZR87_RS20865 - acyl-CoA dehydrogenase family protein, at 1,066,338 to 1,067,495 _RS20865
Group Condition ABZR87_RS20845 ABZR87_RS20850 ABZR87_RS20855 ABZR87_RS20860 ABZR87_RS20865
carbon source Suberic (C) -0.2 -0.1 -0.2 -0.4 -4.1
carbon source Sebacic (C) -0.2 -0.2 -0.1 -0.4 -3.8
carbon source adipate (C) -0.1 -0.2 +0.0 -0.4 -3.8
carbon source adipate (C) -0.0 -0.0 -0.0 -0.7 -3.4
carbon source Dodecandioic (C) +0.1 -0.0 +0.4 -1.0 -3.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 -1.8 +0.1 -1.3 -0.2
carbon source Dodecandioic (C) -0.2 +0.2 +0.3 -0.1 -3.0
carbon source Sebacic (C) -0.6 +0.2 +0.0 +0.3 -2.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 -0.4 -0.4 -0.6
root root EcoFAB sample 1; outgrowth in LB +0.1 -1.2 -0.5 -0.0 -0.2
soil soil EcoFAB sample 1; outgrowth in LB +0.0 -0.7 -0.3 -0.4 -0.3
carbon source Azelaic (C) +0.3 -0.1 +0.2 -1.1 -0.1
rhizosphere rhizosphere sample 3; outgrowth in LB -0.6 -1.0 +0.0 +0.2 +0.5
carbon source 4-Hydroxybenzoic Acid (C) -0.6 +0.2 -0.5 +0.2 -0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 -1.1 +0.0 +0.3 +0.1
carbon source Heptanoic (C) -0.1 -0.3 +0.5 -0.6 -0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.5 -0.8 +0.5 -0.4
micoeukaryotes C.elegans, mixed culture-2 -0.0 -0.6 +0.3 +0.4 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.6 -0.1 +0.1 -0.4
phage Ra3_1 -0.1 +0.4 +0.3 -0.6 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 -0.4 -0.1 +0.4 +0.3
root root sample 5; outgrowth in LB -0.1 +0.6 -0.8 +0.4 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.3 -0.3 +0.4 +0.1 +0.3
root root sample 6; outgrowth in LB -0.3 -0.9 +0.5 +0.4 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 -0.4 +0.6 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.1 +0.6 +0.1 +0.3
carbon source Pimelic (C) -0.1 -0.0 -0.0 -0.4 +1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.3 +0.2 -0.3 +0.1
carbon source Pimelic (C) -0.4 +0.1 +0.0 -0.0 +1.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.9 -0.2 -0.3 +1.2 +0.2
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ABZR87_RS20845
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ABZR87_RS20850
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